Orthogroup:group_302


Homologs in group_302

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07975 FBDBKF_07975 Morganella morganii S1 - Ca2+-binding protein, RTX toxin-related
EHELCC_13805 EHELCC_13805 Morganella morganii S2 - Ca2+-binding protein, RTX toxin-related
NLDBIP_14250 NLDBIP_14250 Morganella morganii S4 - Ca2+-binding protein, RTX toxin-related
LHKJJB_08600 LHKJJB_08600 Morganella morganii S3 - Ca2+-binding protein, RTX toxin-related
HKOGLL_08150 HKOGLL_08150 Morganella morganii S5 - Ca2+-binding protein, RTX toxin-related
F4V73_RS13010 F4V73_RS13010 Morganella psychrotolerans - serralysin family metalloprotease
F4V73_RS16265 F4V73_RS16265 Morganella psychrotolerans - calcium-binding protein
PMI_RS01355 PMI_RS01355 Proteus mirabilis HI4320 - serralysin family metalloprotease

Distribution of group_302 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_302 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_302

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_302.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 8

Product

# Product Occurence
1 Ca2+-binding protein, RTX toxin-related 5
2 serralysin family metalloprotease 2
3 calcium-binding protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2931 8 Q Secondary metabolites biosynthesis, transport and catabolism (Q) Ca2+-binding protein, RTX toxin-related

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01406 8 serralysin [EC:3.4.24.40] Cationic antimicrobial peptide (CAMP) resistance -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00353 8 RTX calcium-binding nonapeptide repeat (4 copies)
PF00413 2 Matrixin
PF08548 7 Peptidase M10 serralysin C terminal
PF13583 5 Metallo-peptidase family M12B Reprolysin-like

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG043807 1 serralysin family metalloprotease VF1332 Exotoxin

Annotations of the 57 SwissProt hits

Annotation Number of occurrences
Alginate lyase 7 1
Bifunctional hemolysin/adenylate cyclase 3
Cytolysin RtxA 1
Exotoxin PaxA 1
Hemolysin 1
Hemolysin, chromosomal 1
Hemolysin, plasmid 1
Iron-regulated protein FrpA 2
Iron-regulated protein FrpC 2
Leukotoxin 16
Lipase 2
Mannuronan C5-epimerase AlgE1 1
Mannuronan C5-epimerase AlgE2 1
Mannuronan C5-epimerase AlgE3 1
Mannuronan C5-epimerase AlgE4 1
Mannuronan C5-epimerase AlgE5 1
Mannuronan C5-epimerase AlgE6 1
Metallopeptidase AprA 1
Metalloprotease AprA 1
RTX-I toxin determinant A from serotypes 1/9 1
RTX-I toxin determinant A from serotypes 5/10 1
RTX-II toxin determinant A 1
RTX-III toxin determinant A from serotype 2 1
RTX-III toxin determinant A from serotype 8 1
S-layer protein 1
Serralysin 7
Serralysin A 1
Serralysin B 1
Serralysin C 2
Serralysin G 1

Protein length

Min length 484
Max length 609
Mean length (sd) 500.5 (43.9)
Median length 484.0

Protein length distribution