Orthogroup:group_2940


Homologs in group_2940

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14935 FBDBKF_14935 Morganella morganii S1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
EHELCC_11310 EHELCC_11310 Morganella morganii S2 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
NLDBIP_11655 NLDBIP_11655 Morganella morganii S4 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
LHKJJB_11515 LHKJJB_11515 Morganella morganii S3 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
HKOGLL_10125 HKOGLL_10125 Morganella morganii S5 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
PMI_RS14700 PMI_RS14700 Proteus mirabilis HI4320 - dihydrodipicolinate synthase family protein

Distribution of group_2940 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2940 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2940

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2940.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dapA 5
2 - 1

Product

# Product Occurence
1 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase 5
2 dihydrodipicolinate synthase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0329 6 EM Amino acid transport and metabolism (E)
Cell wall/membrane/envelope biogenesis (M)		 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01639 6 N-acetylneuraminate lyase [EC:4.1.3.3] Amino sugar and nucleotide sugar metabolism
Metabolic pathways		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00701 6 Dihydrodipicolinate synthetase family

Annotations of the 534 SwissProt hits

Annotation Number of occurrences
2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase 2
2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4
4-hydroxy-2-oxoglutarate aldolase, mitochondrial 6
4-hydroxy-tetrahydrodipicolinate synthase 398
4-hydroxy-tetrahydrodipicolinate synthase 1 3
4-hydroxy-tetrahydrodipicolinate synthase 2 3
4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic 1
4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic 2
L-threo-3-deoxy-hexylosonate aldolase 2
N-acetylneuraminate lyase 81
N-acetylneuraminate lyase 1 1
N-acetylneuraminate lyase 2 1
N-acetylneuraminate lyase A 1
N-acetylneuraminate lyase B 1
Probable 2-dehydro-3-deoxy-D-pentonate aldolase YjhH 1
Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial 1
Probable 5-dehydro-4-deoxyglucarate dehydratase 8
Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE 1
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase 2
Uncharacterized DapA-like lyase 1
Uncharacterized DapA-like lyase Caur_1967 1
Uncharacterized DapA-like lyase OE_1665R 1
Uncharacterized DapA-like lyase PAE2915 1
Uncharacterized DapA-like lyase PF0657 1
Uncharacterized DapA-like lyase PH0847 1
Uncharacterized DapA-like lyase PYRAB12600 1
Uncharacterized DapA-like lyase Pars_0992 1
Uncharacterized DapA-like lyase Pisl_0309 1
Uncharacterized DapA-like lyase TK1237 1
Uncharacterized DapA-like lyase TON_0506 1
Uncharacterized DapA-like lyase Ta1157 1
Uncharacterized DapA-like lyase Tneu_1812 1
Uncharacterized DapA-like lyase Tpen_1666 1
Uncharacterized DapA-like lyase VNG_0444G 1

Protein length

Min length 296
Max length 297
Mean length (sd) 296.2 (0.4)
Median length 296.0

Protein length distribution