Orthogroup:group_29


Homologs in group_29

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15 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01365 FBDBKF_01365 Morganella morganii S1 - Type VI secretion system tube protein Hcp
FBDBKF_01535 FBDBKF_01535 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_00180 EHELCC_00180 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 Morganella morganii S4 - Type VI secretion system tube protein Hcp
NLDBIP_03450 NLDBIP_03450 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_04795 LHKJJB_04795 Morganella morganii S3 - Type VI secretion system tube protein Hcp
LHKJJB_19860 LHKJJB_19860 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_02250 HKOGLL_02250 Morganella morganii S5 - Type VI secretion system tube protein Hcp
F4V73_RS16845 F4V73_RS16845 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector
PMI_RS13890 PMI_RS13890 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of group_29 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_29 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_29

Orthogroup content: 15 members

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This page summarizes the annotation of all members of the orthologous group group_29.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 15

Product

# Product Occurence
1 Type VI secretion system tube protein Hcp 5
2 Hcp family type VI secretion system effector 10

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3157 14 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06887 14 uncharacterized protein - -
K11903 1 type VI secretion system secreted protein Hcp Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05638 15 Type VI secretion system effector, Hcp

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG048679 1 type VI secretion system protein, Hcp family VF0569 Effector delivery system

Annotations of the 3 SwissProt hits

Annotation Number of occurrences
Major exported protein 1
Major exported protein (Fragment) 1
Uncharacterized protein YhhZ 1

Protein length

Min length 157
Max length 163
Mean length (sd) 159.1 (1.2)
Median length 159.0

Protein length distribution