COG0078


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0078, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ornithine carbamoyltransferase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0078 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2766 FBDBKF_07770 74264 75451 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S1
1 group_1426 FBDBKF_08815 142682 143695 -1 argF ornithine carbamoyltransferase Morganella morganii S1
2 group_1426 EHELCC_12710 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S2
3 group_2766 EHELCC_13600 48458 49645 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S2
4 group_1426 NLDBIP_13050 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S4
5 group_2766 NLDBIP_14045 69333 70520 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S4
6 group_2766 LHKJJB_08805 89229 90416 1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S3
7 group_1426 LHKJJB_13505 141400 142413 -1 argF ornithine carbamoyltransferase Morganella morganii S3
8 group_2766 HKOGLL_08355 89229 90416 1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S5
9 group_1426 HKOGLL_11525 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S5
10 group_1426 F4V73_RS10035 113268 114281 -1 argF ornithine carbamoyltransferase Morganella psychrotolerans
11 group_2766 F4V73_RS13275 282599 283786 1 ygeW knotted carbamoyltransferase YgeW Morganella psychrotolerans
12 group_1426 PMI_RS17230 3783274 3784278 -1 argF ornithine carbamoyltransferase Proteus mirabilis HI4320