Orthogroup:group_2576


Homologs in group_2576

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02825 FBDBKF_02825 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_03295 EHELCC_03295 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_00165 NLDBIP_00165 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_01870 LHKJJB_01870 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_01910 HKOGLL_01910 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS05265 F4V73_RS05265 Morganella psychrotolerans - AraC family transcriptional regulator

Distribution of group_2576 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2576 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2576

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2576.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 1

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 1 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins
COG4977 5 K Transcription (K) Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07506 6 AraC family transcriptional regulator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02311 6 AraC-like ligand binding domain
PF12833 6 Helix-turn-helix domain

Annotations of the 154 SwissProt hits

Annotation Number of occurrences
Anthranilate 1,2-dioxygenase regulatory protein 1
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme Ada 1
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 39
HTH-type transcriptional activator RhaS 56
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RipA 3
HTH-type transcriptional regulator Rv1931c 1
HTH-type transcriptional regulator YesS 1
Lactose operon transcription activator 1
MmsAB operon regulatory protein 1
Msm operon regulatory protein 1
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Probable transcriptional regulator LumQ 1
Regulatory protein PocR 1
Regulatory protein SoxS 1
Regulatory protein ada 1
Right origin-binding protein 3
Thermoregulatory protein LcrF 1
Transcriptional activator NphR 1
Transcriptional activator RamA 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transcriptional regulatory protein HptR 9
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YidL 1
Uncharacterized HTH-type transcriptional regulator YobQ 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Virulence regulon transcriptional activator VirF 2

Protein length

Min length 278
Max length 282
Mean length (sd) 278.7 (1.6)
Median length 278.0

Protein length distribution