Orthogroup:group_2488



Homologs in group_2488

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01530 FBDBKF_01530 Morganella morganii S1 iclR DNA-binding transcriptional regulator, IclR family
EHELCC_00015 EHELCC_00015 Morganella morganii S2 iclR DNA-binding transcriptional regulator, IclR family
NLDBIP_03445 NLDBIP_03445 Morganella morganii S4 iclR DNA-binding transcriptional regulator, IclR family
LHKJJB_04960 LHKJJB_04960 Morganella morganii S3 iclR DNA-binding transcriptional regulator, IclR family
HKOGLL_02085 HKOGLL_02085 Morganella morganii S5 iclR DNA-binding transcriptional regulator, IclR family
PMI_RS13600 PMI_RS13600 Proteus mirabilis HI4320 iclR glyoxylate bypass operon transcriptional repressor IclR

Distribution of group_2488 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2488 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2488

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2488.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 iclR 6

Product

# Product Occurence
1 DNA-binding transcriptional regulator, IclR family 5
2 glyoxylate bypass operon transcriptional repressor IclR 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1414 6 K Transcription (K) DNA-binding transcriptional regulator, IclR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K13641 1 IclR family transcriptional regulator, acetate operon repressor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01614 6 Bacterial transcriptional regulator
PF09339 6 IclR helix-turn-helix domain

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
Acetate operon repressor 1
DNA-binding transcriptional activator MhpR 1
DNA-binding transcriptional repressor YiaJ 1
Glycerol operon regulatory protein 2
HTH-type transcriptional regulator BhcR 1
HTH-type transcriptional regulator KdgR 2
HTH-type transcriptional regulator KipR 1
HTH-type transcriptional regulator Rv1719 1
HTH-type transcriptional regulator SrpS 1
HTH-type transcriptional regulator TtgV 1
HTH-type transcriptional regulator XacR 1
HTH-type transcriptional regulator XynR 1
HTH-type transcriptional repressor AllR 11
Pca operon regulatory protein 1
Pca regulon regulatory protein 1
Probable HTH-type transcriptional regulator ArcR 1
Probable transcriptional regulator SauR 1
Transcriptional repressor IclR 1
Uncharacterized HTH-type transcriptional regulator HI_1032 1
Uncharacterized HTH-type transcriptional regulator RhmR 1
Uncharacterized HTH-type transcriptional regulator YjhI 1
p-hydroxybenzoate hydroxylase transcriptional activator 1

Protein length

Min length 257
Max length 278
Mean length (sd) 260.5 (8.6)
Median length 257.0

Protein length distribution