Orthogroup:group_2435



Homologs in group_2435

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19765 FBDBKF_19765 Morganella morganii S1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
EHELCC_10860 EHELCC_10860 Morganella morganii S2 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
NLDBIP_11205 NLDBIP_11205 Morganella morganii S4 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
LHKJJB_10150 LHKJJB_10150 Morganella morganii S3 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
HKOGLL_16315 HKOGLL_16315 Morganella morganii S5 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
PMI_RS12950 PMI_RS12950 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase
PMI_RS13745 PMI_RS13745 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase

Distribution of group_2435 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2435 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2435

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2435.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpnC 5
2 - 2

Product

# Product Occurence
1 Recombination-promoting DNA endonuclease RpnC/YadD 5
2 Rpn family recombination-promoting nuclease/putative transposase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG5464 7 L Replication, recombination and repair (L) Recombination-promoting DNA endonuclease RpnC/YadD

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04754 7 Putative transposase, YhgA-like

Annotations of the 9 SwissProt hits

Annotation Number of occurrences
Inactive recombination-promoting nuclease-like protein RpnE 1
Putative inactive recombination-promoting nuclease-like protein YjiP 1
Putative inactive recombination-promoting nuclease-like protein YjiQ 1
Recombination-promoting nuclease RpnA 1
Recombination-promoting nuclease RpnB 1
Recombination-promoting nuclease RpnC 1
Recombination-promoting nuclease RpnD 2
Recombination-promoting nuclease pSLT051 1

Protein length

Min length 307
Max length 322
Mean length (sd) 314.9 (4.3)
Median length 315.0

Protein length distribution