COG0551


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0551, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0551 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2364 FBDBKF_19070 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S1
1 group_2364 EHELCC_18815 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S2
2 group_2364 NLDBIP_18830 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S4
3 group_2364 LHKJJB_18685 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S3
4 group_2364 HKOGLL_18420 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S5
5 group_2364 F4V73_RS19095 27552 28070 1 topoisomerase DNA-binding C4 zinc finger domain-containing protein Morganella psychrotolerans
6 group_2364 PMI_RS16320 3603180 3603737 1 type I DNA topoisomerase Proteus mirabilis HI4320