Orthogroup:group_2374


Homologs in group_2374

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19120 FBDBKF_19120 Morganella morganii S1 rpoA DNA-directed RNA polymerase subunit alpha
EHELCC_18865 EHELCC_18865 Morganella morganii S2 rpoA DNA-directed RNA polymerase subunit alpha
NLDBIP_18880 NLDBIP_18880 Morganella morganii S4 rpoA DNA-directed RNA polymerase subunit alpha
LHKJJB_18735 LHKJJB_18735 Morganella morganii S3 rpoA DNA-directed RNA polymerase subunit alpha
HKOGLL_18470 HKOGLL_18470 Morganella morganii S5 rpoA DNA-directed RNA polymerase subunit alpha
F4V73_RS19045 F4V73_RS19045 Morganella psychrotolerans rpoA DNA-directed RNA polymerase subunit alpha
PMI_RS16270 PMI_RS16270 Proteus mirabilis HI4320 rpoA DNA-directed RNA polymerase subunit alpha

Distribution of group_2374 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2374 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2374

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2374.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoA 7

Product

# Product Occurence
1 DNA-directed RNA polymerase subunit alpha 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0202 7 K Transcription (K) DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03040 7 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] RNA polymerase -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01000 7 RNA polymerase Rpb3/RpoA insert domain
PF01193 7 RNA polymerase Rpb3/Rpb11 dimerisation domain
PF03118 7 Bacterial RNA polymerase, alpha chain C terminal domain

Annotations of the 504 SwissProt hits

Annotation Number of occurrences
DNA-directed RNA polymerase subunit alpha 501
DNA-directed RNA polymerase subunit alpha 1 2
DNA-directed RNA polymerase subunit alpha 2 1

Protein length

Unique protein length 329

Protein length distribution