Orthogroup:group_2368


Homologs in group_2368

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19090 FBDBKF_19090 Morganella morganii S1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
EHELCC_18835 EHELCC_18835 Morganella morganii S2 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
NLDBIP_18850 NLDBIP_18850 Morganella morganii S4 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
LHKJJB_18705 LHKJJB_18705 Morganella morganii S3 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
HKOGLL_18440 HKOGLL_18440 Morganella morganii S5 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
F4V73_RS19075 F4V73_RS19075 Morganella psychrotolerans rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
PMI_RS16300 PMI_RS16300 Proteus mirabilis HI4320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB

Distribution of group_2368 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2368 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2368

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2368.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rsmB 7

Product

# Product Occurence
1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0144 7 J Translation, ribosomal structure and biogenesis (J) 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03500 7 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01029 7 NusB family
PF01189 7 16S rRNA methyltransferase RsmB/F
PF22458 7 Methyltr_RsmF/B-like, ferredoxin-like domain

Annotations of the 219 SwissProt hits

Annotation Number of occurrences
25S rRNA (cytosine(2278)-C(5))-methyltransferase 1
25S rRNA (cytosine(2870)-C(5))-methyltransferase 1
25S rRNA (cytosine-C(5))-methyltransferase NOP2A 1
25S rRNA (cytosine-C(5))-methyltransferase NSUN5 1
25S rRNA (cytosine-C(5))-methyltransferase nop2 1
25S rRNA (cytosine-C(5))-methyltransferase rcm1 1
26S rRNA (cytosine-C(5))-methyltransferase NOP2B 1
26S rRNA (cytosine-C(5))-methyltransferase nsun-1 1
26S rRNA (cytosine-C(5))-methyltransferase nsun-5 1
28S rRNA (cytosine(4447)-C(5))-methyltransferase 1
28S rRNA (cytosine-C(5))-methyltransferase 4
5-methylcytosine rRNA methyltransferase NSUN4 5
5-methylcytosine rRNA methyltransferase nsun-4 1
Multisite-specific tRNA:(cytosine-C(5))-methyltransferase 1
Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a 1
Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b 1
Probable ribosomal RNA small subunit methyltransferase B 3
Putative methyltransferase MT1451 1
Putative methyltransferase Rv1407 1
Putative ribosomal RNA small subunit methyltransferase F 1
RNA cytosine C(5)-methyltransferase NSUN2 2
RNA cytosine-C(5)-methyltransferase NSUN2 3
Ribosomal RNA small subunit methyltransferase B 81
Ribosomal RNA small subunit methyltransferase F 86
Transcription antitermination protein NusB 7
rRNA (cytosine-C(5))-methyltransferase NOP2C 1
tRNA (cytosine(34)-C(5))-methyltransferase 1
tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial 4
tRNA (cytosine(48)-C(5))-methyltransferase 1
tRNA (cytosine(49)-C(5))-methyltransferase 1
tRNA (cytosine(72)-C(5))-methyltransferase 1
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 2

Protein length

Min length 422
Max length 430
Mean length (sd) 428.4 (3.0)
Median length 430.0

Protein length distribution