Orthogroup:group_235


Homologs in group_235

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01470 FBDBKF_01470 Morganella morganii S1 srmB ATP-dependent RNA helicase SrmB
EHELCC_00075 EHELCC_00075 Morganella morganii S2 srmB ATP-dependent RNA helicase SrmB
NLDBIP_03385 NLDBIP_03385 Morganella morganii S4 srmB ATP-dependent RNA helicase SrmB
LHKJJB_04900 LHKJJB_04900 Morganella morganii S3 srmB ATP-dependent RNA helicase SrmB
HKOGLL_02145 HKOGLL_02145 Morganella morganii S5 srmB ATP-dependent RNA helicase SrmB
F4V73_RS01935 F4V73_RS01935 Morganella psychrotolerans srmB ATP-dependent RNA helicase SrmB
PMI_RS09360 PMI_RS09360 Proteus mirabilis HI4320 srmB ATP-dependent RNA helicase SrmB
PMI_RS12250 PMI_RS12250 Proteus mirabilis HI4320 - DEAD/DEAH box helicase

Distribution of group_235 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_235 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_235

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_235.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 srmB 7
2 - 1

Product

# Product Occurence
1 ATP-dependent RNA helicase SrmB 7
2 DEAD/DEAH box helicase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0513 7 L Replication, recombination and repair (L) Superfamily II DNA and RNA helicase
COG1205 1 L Replication, recombination and repair (L) ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05590 7 ATP-dependent RNA helicase SrmB [EC:3.6.4.13] - -
K06877 1 DEAD/DEAH box helicase domain-containing protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 8 DEAD/DEAH box helicase
PF00271 8 Helicase conserved C-terminal domain
PF09369 1 MrfA Zn-binding domain

Annotations of the 604 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase Hel308 3
ATP-dependent RNA helicase CshA 2
ATP-dependent RNA helicase DBP1 3
ATP-dependent RNA helicase DBP10 18
ATP-dependent RNA helicase DBP2 17
ATP-dependent RNA helicase DBP2-A 2
ATP-dependent RNA helicase DBP3 17
ATP-dependent RNA helicase DBP5 1
ATP-dependent RNA helicase DBP8 4
ATP-dependent RNA helicase DDX39A 1
ATP-dependent RNA helicase DDX4 1
ATP-dependent RNA helicase DDX42 5
ATP-dependent RNA helicase DDX47 1
ATP-dependent RNA helicase DDX54 2
ATP-dependent RNA helicase DED1 10
ATP-dependent RNA helicase DHH1 16
ATP-dependent RNA helicase DRS1 20
ATP-dependent RNA helicase DbpA 4
ATP-dependent RNA helicase DeaD 11
ATP-dependent RNA helicase FAL1 19
ATP-dependent RNA helicase ROK1 3
ATP-dependent RNA helicase RhlB 121
ATP-dependent RNA helicase RhlE 1
ATP-dependent RNA helicase SUB2 13
ATP-dependent RNA helicase SUB2-1 1
ATP-dependent RNA helicase SUB2-2 1
ATP-dependent RNA helicase SrmB 2
ATP-dependent RNA helicase abstrakt 1
ATP-dependent RNA helicase cgh-1 1
ATP-dependent RNA helicase dbp-10 1
ATP-dependent RNA helicase dbp10 9
ATP-dependent RNA helicase dbp2 10
ATP-dependent RNA helicase dbp3 10
ATP-dependent RNA helicase dbp8 4
ATP-dependent RNA helicase ddx46 1
ATP-dependent RNA helicase ddx54 1
ATP-dependent RNA helicase ded1 9
ATP-dependent RNA helicase dhh1 8
ATP-dependent RNA helicase drs1 10
ATP-dependent RNA helicase fal-1 1
ATP-dependent RNA helicase fal1 10
ATP-dependent RNA helicase glh-1 1
ATP-dependent RNA helicase glh-2 1
ATP-dependent RNA helicase me31b 1
ATP-dependent RNA helicase p62 1
ATP-dependent RNA helicase sub2 8
ATP-dependent RNA helicase uap56 1
ATP-dependent RNA helicase vasa 1
ATP-dependent RNA helicase-like protein DB10 1
ATP-dependent helicase HRQ1 1
ATP-dependent helicase hrq1 1
ATP-dependent rRNA helicase RRP3 22
ATP-dependent rRNA helicase rrp-3 1
ATP-dependent rRNA helicase rrp3 10
Activating signal cointegrator 1 complex subunit 3 1
DEAD-box ATP-dependent RNA helicase 10 3
DEAD-box ATP-dependent RNA helicase 11 1
DEAD-box ATP-dependent RNA helicase 12 1
DEAD-box ATP-dependent RNA helicase 14 2
DEAD-box ATP-dependent RNA helicase 15 2
DEAD-box ATP-dependent RNA helicase 20 2
DEAD-box ATP-dependent RNA helicase 21 2
DEAD-box ATP-dependent RNA helicase 24 2
DEAD-box ATP-dependent RNA helicase 28 2
DEAD-box ATP-dependent RNA helicase 29 2
DEAD-box ATP-dependent RNA helicase 3, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 30 2
DEAD-box ATP-dependent RNA helicase 34 1
DEAD-box ATP-dependent RNA helicase 36 2
DEAD-box ATP-dependent RNA helicase 37 2
DEAD-box ATP-dependent RNA helicase 3B, chloroplastic 1
DEAD-box ATP-dependent RNA helicase 40 1
DEAD-box ATP-dependent RNA helicase 46 1
DEAD-box ATP-dependent RNA helicase 5 2
DEAD-box ATP-dependent RNA helicase 52A 1
DEAD-box ATP-dependent RNA helicase 52B 1
DEAD-box ATP-dependent RNA helicase 52C 1
DEAD-box ATP-dependent RNA helicase 56 2
DEAD-box ATP-dependent RNA helicase 6 2
DEAD-box ATP-dependent RNA helicase 8 2
DEAD-box ATP-dependent RNA helicase 9, mitochondrial 1
DEAD-box ATP-dependent RNA helicase CshA 24
DEAD-box ATP-dependent RNA helicase CshE 1
DEAD-box ATP-dependent RNA helicase RhpA 2
Druantia protein DruE 1
Eukaryotic initiation factor 4A 5
Eukaryotic initiation factor 4A-1 2
Eukaryotic initiation factor 4A-10 1
Eukaryotic initiation factor 4A-11 1
Eukaryotic initiation factor 4A-14 1
Eukaryotic initiation factor 4A-15 1
Eukaryotic initiation factor 4A-2 2
Eukaryotic initiation factor 4A-3 3
Eukaryotic initiation factor 4A-7 1
Eukaryotic initiation factor 4A-8 1
Eukaryotic initiation factor 4A-9 1
Eukaryotic initiation factor 4A-III 12
Eukaryotic initiation factor 4A-III homolog 1
Eukaryotic initiation factor 4A-III homolog A 1
Eukaryotic initiation factor 4A-III homolog B 1
Eukaryotic initiation factor 4A-III-A 1
Eukaryotic initiation factor 4A-III-B 1
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 7
Pre-mRNA-processing ATP-dependent RNA helicase prp11 1
Pre-mRNA-processing ATP-dependent RNA helicase prp5 2
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 6
Pre-mRNA-splicing ATP-dependent RNA helicase prp28 5
Probable ATP-dependent RNA helicase DDX17 2
Probable ATP-dependent RNA helicase DDX23 2
Probable ATP-dependent RNA helicase DDX27 3
Probable ATP-dependent RNA helicase DDX4 1
Probable ATP-dependent RNA helicase DDX41 2
Probable ATP-dependent RNA helicase DDX43 1
Probable ATP-dependent RNA helicase DDX46 1
Probable ATP-dependent RNA helicase DDX47 3
Probable ATP-dependent RNA helicase DDX49 2
Probable ATP-dependent RNA helicase DDX5 5
Probable ATP-dependent RNA helicase DDX53 1
Probable ATP-dependent RNA helicase DDX56 2
Probable ATP-dependent RNA helicase DDX59 2
Probable ATP-dependent RNA helicase DDX6 1
Probable ATP-dependent RNA helicase MG425 homolog 1
Probable ATP-dependent RNA helicase MJ0669 1
Probable ATP-dependent RNA helicase ddx17 1
Probable ATP-dependent RNA helicase ddx27 1
Probable ATP-dependent RNA helicase ddx3 1
Probable ATP-dependent RNA helicase ddx41 1
Probable ATP-dependent RNA helicase ddx42 1
Probable ATP-dependent RNA helicase ddx47 1
Probable ATP-dependent RNA helicase ddx49 1
Probable ATP-dependent RNA helicase ddx6 2
Probable ATP-dependent RNA helicase vasa-like 1
Probable ATP-dependent helicase Lhr 1
Putative ATP-dependent RNA helicase T26G10.1 1
Putative ATP-dependent RNA helicase ste13 1
Putative DEAD-box ATP-dependent RNA helicase 29 1
Putative DEAD-box ATP-dependent RNA helicase 43 1
RNA helicase CrhR 1
Uncharacterized ATP-dependent helicase MJ0294 1
Uncharacterized ATP-dependent helicase MJ1574 1
Uncharacterized ATP-dependent helicase MTH_1802 1
Uncharacterized ATP-dependent helicase SSO0112 1
Uncharacterized ATP-dependent helicase YprA 1

Protein length

Min length 448
Max length 2140
Mean length (sd) 660.1 (598.0)
Median length 448.0

Protein length distribution