Orthogroup:group_2290


Homologs in group_2290

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17585 FBDBKF_17585 Morganella morganii S1 rpoC DNA-directed RNA polymerase subunit beta'
EHELCC_18070 EHELCC_18070 Morganella morganii S2 rpoC DNA-directed RNA polymerase subunit beta'
NLDBIP_18080 NLDBIP_18080 Morganella morganii S4 rpoC DNA-directed RNA polymerase subunit beta'
LHKJJB_18275 LHKJJB_18275 Morganella morganii S3 rpoC DNA-directed RNA polymerase subunit beta'
HKOGLL_17925 HKOGLL_17925 Morganella morganii S5 rpoC DNA-directed RNA polymerase subunit beta'
F4V73_RS14965 F4V73_RS14965 Morganella psychrotolerans rpoC DNA-directed RNA polymerase subunit beta'
PMI_RS13750 PMI_RS13750 Proteus mirabilis HI4320 rpoC DNA-directed RNA polymerase subunit beta'

Distribution of group_2290 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2290 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2290

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2290.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoC 7

Product

# Product Occurence
1 DNA-directed RNA polymerase subunit beta' 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0086 7 K Transcription (K) DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03046 7 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] RNA polymerase -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00623 7 RNA polymerase Rpb1, domain 2
PF04983 7 RNA polymerase Rpb1, domain 3
PF04997 7 RNA polymerase Rpb1, domain 1
PF04998 7 RNA polymerase Rpb1, domain 5
PF05000 7 RNA polymerase Rpb1, domain 4

Annotations of the 502 SwissProt hits

Annotation Number of occurrences
Bifunctional DNA-directed RNA polymerase subunit beta-beta' 9
DNA-directed RNA polymerase subunit beta' 490
DNA-directed RNA polymerase subunit beta' (Fragment) 3

Protein length

Min length 1407
Max length 1409
Mean length (sd) 1408.0 (0.6)
Median length 1408.0

Protein length distribution