Orthogroup:group_2289


Homologs in group_2289

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17580 FBDBKF_17580 Morganella morganii S1 rpoB DNA-directed RNA polymerase subunit beta
EHELCC_18065 EHELCC_18065 Morganella morganii S2 rpoB DNA-directed RNA polymerase subunit beta
NLDBIP_18085 NLDBIP_18085 Morganella morganii S4 rpoB DNA-directed RNA polymerase subunit beta
LHKJJB_18280 LHKJJB_18280 Morganella morganii S3 rpoB DNA-directed RNA polymerase subunit beta
HKOGLL_17920 HKOGLL_17920 Morganella morganii S5 rpoB DNA-directed RNA polymerase subunit beta
F4V73_RS14960 F4V73_RS14960 Morganella psychrotolerans rpoB DNA-directed RNA polymerase subunit beta
PMI_RS13755 PMI_RS13755 Proteus mirabilis HI4320 rpoB DNA-directed RNA polymerase subunit beta

Distribution of group_2289 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2289 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2289

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2289.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoB 7

Product

# Product Occurence
1 DNA-directed RNA polymerase subunit beta 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0085 7 K Transcription (K) DNA-directed RNA polymerase, beta subunit/140 kD subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03043 7 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] RNA polymerase -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00562 7 RNA polymerase Rpb2, domain 6
PF04560 7 RNA polymerase Rpb2, domain 7
PF04561 7 RNA polymerase Rpb2, domain 2
PF04563 7 RNA polymerase beta subunit
PF04565 7 RNA polymerase Rpb2, domain 3
PF10385 7 RNA polymerase beta subunit external 1 domain

Annotations of the 519 SwissProt hits

Annotation Number of occurrences
Bifunctional DNA-directed RNA polymerase subunit beta-beta' 9
DNA-directed RNA polymerase subunit beta 510

Protein length

Unique protein length 1342

Protein length distribution