Orthogroup:group_2252


Homologs in group_2252

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17360 FBDBKF_17360 Morganella morganii S1 dxs 1-deoxy-D-xylulose-5-phosphate synthase
EHELCC_17255 EHELCC_17255 Morganella morganii S2 dxs 1-deoxy-D-xylulose-5-phosphate synthase
NLDBIP_17940 NLDBIP_17940 Morganella morganii S4 dxs 1-deoxy-D-xylulose-5-phosphate synthase
LHKJJB_17860 LHKJJB_17860 Morganella morganii S3 dxs 1-deoxy-D-xylulose-5-phosphate synthase
HKOGLL_17870 HKOGLL_17870 Morganella morganii S5 dxs 1-deoxy-D-xylulose-5-phosphate synthase
F4V73_RS16535 F4V73_RS16535 Morganella psychrotolerans dxs 1-deoxy-D-xylulose-5-phosphate synthase
PMI_RS00450 PMI_RS00450 Proteus mirabilis HI4320 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Distribution of group_2252 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2252 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2252

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2252.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dxs 7

Product

# Product Occurence
1 1-deoxy-D-xylulose-5-phosphate synthase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1154 7 HI Coenzyme transport and metabolism (H)
Lipid transport and metabolism (I)		 Deoxyxylulose-5-phosphate synthase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02779 7 Transketolase, pyrimidine binding domain
PF02780 7 Transketolase, C-terminal domain
PF13292 7 1-deoxy-D-xylulose-5-phosphate synthase

Annotations of the 506 SwissProt hits

Annotation Number of occurrences
1-deoxy-D-xylulose-5-phosphate synthase 481
1-deoxy-D-xylulose-5-phosphate synthase 1 9
1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic 2
1-deoxy-D-xylulose-5-phosphate synthase 2 10
1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic 1
1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic 1
Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic 1
Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic 1

Protein length

Min length 622
Max length 624
Mean length (sd) 622.3 (0.8)
Median length 622.0

Protein length distribution