Orthogroup:group_2183


Homologs in group_2183

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16440 FBDBKF_16440 Morganella morganii S1 rluF 23S rRNA pseudouridine(2604) synthase RluF
EHELCC_08305 EHELCC_08305 Morganella morganii S2 rluF 23S rRNA pseudouridine(2604) synthase RluF
NLDBIP_08630 NLDBIP_08630 Morganella morganii S4 rluF 23S rRNA pseudouridine(2604) synthase RluF
LHKJJB_05635 LHKJJB_05635 Morganella morganii S3 rluF 23S rRNA pseudouridine(2604) synthase RluF
HKOGLL_05280 HKOGLL_05280 Morganella morganii S5 rluF 23S rRNA pseudouridine(2604) synthase RluF
F4V73_RS02960 F4V73_RS02960 Morganella psychrotolerans rluF 23S rRNA pseudouridine(2604) synthase RluF
PMI_RS14195 PMI_RS14195 Proteus mirabilis HI4320 rluF 23S rRNA pseudouridine(2604) synthase RluF

Distribution of group_2183 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2183 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2183

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2183.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rluF 7

Product

# Product Occurence
1 23S rRNA pseudouridine(2604) synthase RluF 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1187 7 J Translation, ribosomal structure and biogenesis (J) Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06182 7 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00849 7 RNA pseudouridylate synthase
PF01479 7 S4 domain

Annotations of the 73 SwissProt hits

Annotation Number of occurrences
Dual-specificity RNA pseudouridine synthase RluF 6
Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 1
Ribosomal large subunit pseudouridine synthase B 21
Ribosomal large subunit pseudouridine synthase E 15
Ribosomal small subunit pseudouridine synthase A 13
Uncharacterized RNA pseudouridine synthase BB_0129 1
Uncharacterized RNA pseudouridine synthase HP_1459 1
Uncharacterized RNA pseudouridine synthase ML1370 1
Uncharacterized RNA pseudouridine synthase MT1751.1 1
Uncharacterized RNA pseudouridine synthase Mb1738 1
Uncharacterized RNA pseudouridine synthase RBE_0321 1
Uncharacterized RNA pseudouridine synthase RC0807 1
Uncharacterized RNA pseudouridine synthase RF_0863 1
Uncharacterized RNA pseudouridine synthase RP544 1
Uncharacterized RNA pseudouridine synthase RT0532 1
Uncharacterized RNA pseudouridine synthase Rv1711 1
Uncharacterized RNA pseudouridine synthase YtzG 1
Uncharacterized RNA pseudouridine synthase aq_1464 1
Uncharacterized RNA pseudouridine synthase aq_554 1
Uncharacterized RNA pseudouridine synthase jhp_1352 1
Uncharacterized RNA pseudouridine synthase slr0361 1
Uncharacterized RNA pseudouridine synthase slr0612 1

Protein length

Min length 292
Max length 298
Mean length (sd) 297.0 (2.2)
Median length 298.0

Protein length distribution