COG1921


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1921, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Seryl-tRNA(Sec) selenium transferase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1921 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2148 FBDBKF_16140 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S1
1 group_2148 EHELCC_16175 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S2
2 group_2148 NLDBIP_17165 42392 43774 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S4
3 group_2148 LHKJJB_17085 45494 46876 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S3
4 group_2148 HKOGLL_16755 18396 19778 1 selA L-seryl-tRNA(Sec) selenium transferase Morganella morganii S5
5 group_2148 F4V73_RS17475 126409 127791 -1 selA L-seryl-tRNA(Sec) selenium transferase Morganella psychrotolerans
6 group_2148 PMI_RS15375 3415894 3417285 -1 selA L-seryl-tRNA(Sec) selenium transferase Proteus mirabilis HI4320