Orthogroup:group_2114


Homologs in group_2114

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15890 FBDBKF_15890 Morganella morganii S1 hupB nucleoid-associated protein HU-beta
EHELCC_18490 EHELCC_18490 Morganella morganii S2 hupB nucleoid-associated protein HU-beta
NLDBIP_17325 NLDBIP_17325 Morganella morganii S4 hupB nucleoid-associated protein HU-beta
LHKJJB_17335 LHKJJB_17335 Morganella morganii S3 hupB nucleoid-associated protein HU-beta
HKOGLL_17060 HKOGLL_17060 Morganella morganii S5 hupB nucleoid-associated protein HU-beta
F4V73_RS16425 F4V73_RS16425 Morganella psychrotolerans hupB nucleoid-associated protein HU-beta
PMI_RS00570 PMI_RS00570 Proteus mirabilis HI4320 hupB nucleoid-associated protein HU-beta

Distribution of group_2114 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2114 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2114

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_2114.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hupB 7

Product

# Product Occurence
1 nucleoid-associated protein HU-beta 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0776 7 L Replication, recombination and repair (L) Bacterial nucleoid DNA-binding protein IHF-alpha

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03530 7 DNA-binding protein HU-beta - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00216 7 Bacterial DNA-binding protein

Annotations of the 555 SwissProt hits

Annotation Number of occurrences
DNA-binding protein HB1 1
DNA-binding protein HRL18 2
DNA-binding protein HRL53 1
DNA-binding protein HRm 1
DNA-binding protein HU 41
DNA-binding protein HU 1 1
DNA-binding protein HU 2 3
DNA-binding protein HU homolog 1
DNA-binding protein HU-1 2
DNA-binding protein HU-alpha 14
DNA-binding protein HU-beta 12
DNA-binding protein HU-beta 2 1
Integration host factor subunit alpha 233
Integration host factor subunit alpha (Fragment) 1
Integration host factor subunit alpha 1 1
Integration host factor subunit alpha 2 1
Integration host factor subunit beta 238
SPbeta prophage-derived DNA-binding protein HU 2 1

Protein length

Min length 91
Max length 94
Mean length (sd) 93.1 (1.5)
Median length 94.0

Protein length distribution