Orthogroup:group_2040



Homologs in group_2040

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15300 FBDBKF_15300 Morganella morganii S1 ffh signal recognition particle protein
EHELCC_10945 EHELCC_10945 Morganella morganii S2 ffh signal recognition particle protein
NLDBIP_11290 NLDBIP_11290 Morganella morganii S4 ffh signal recognition particle protein
LHKJJB_11150 LHKJJB_11150 Morganella morganii S3 ffh signal recognition particle protein
HKOGLL_09760 HKOGLL_09760 Morganella morganii S5 ffh signal recognition particle protein
F4V73_RS12150 F4V73_RS12150 Morganella psychrotolerans ffh signal recognition particle protein
PMI_RS01855 PMI_RS01855 Proteus mirabilis HI4320 ffh signal recognition particle protein

Distribution of group_2040 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2040 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2040

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2040.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ffh 7

Product

# Product Occurence
1 signal recognition particle protein 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0541 7 U Intracellular trafficking, secretion, and vesicular transport (U) Signal recognition particle GTPase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03106 7 signal recognition particle subunit SRP54 [EC:3.6.5.4] Quorum sensing
Protein export
Bacterial secretion system
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00448 7 SRP54-type protein, GTPase domain
PF02881 7 SRP54-type protein, helical bundle domain
PF02978 7 Signal peptide binding domain

Annotations of the 163 SwissProt hits

Annotation Number of occurrences
Cell division protein FtsY homolog, chloroplastic 1
Flagellar biosynthesis protein FlhF 9
Signal recognition particle 54 kDa protein 52
Signal recognition particle 54 kDa protein (Fragment) 1
Signal recognition particle protein 27
Signal recognition particle receptor FtsY 40
Signal recognition particle receptor subunit alpha 5
Signal recognition particle receptor subunit alpha homolog 3
Signal recognition particle subunit SRP54 16
Signal recognition particle subunit SRP54 1 3
Signal recognition particle subunit SRP54 2 3
Signal recognition particle subunit SRP54 3 2
Signal recognition particle subunit SRP54, chloroplastic 1

Protein length

Unique protein length 453

Protein length distribution