Orthogroup:group_1970


Homologs in group_1970

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14770 FBDBKF_14770 Morganella morganii S1 sbcB exodeoxyribonuclease I
EHELCC_15575 EHELCC_15575 Morganella morganii S2 sbcB exodeoxyribonuclease I
NLDBIP_16105 NLDBIP_16105 Morganella morganii S4 sbcB exodeoxyribonuclease I
LHKJJB_15735 LHKJJB_15735 Morganella morganii S3 sbcB exodeoxyribonuclease I
HKOGLL_14855 HKOGLL_14855 Morganella morganii S5 sbcB exodeoxyribonuclease I
F4V73_RS07565 F4V73_RS07565 Morganella psychrotolerans sbcB exodeoxyribonuclease I
PMI_RS04165 PMI_RS04165 Proteus mirabilis HI4320 sbcB exodeoxyribonuclease I

Distribution of group_1970 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1970 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1970

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1970.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sbcB 7

Product

# Product Occurence
1 exodeoxyribonuclease I 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2925 7 L Replication, recombination and repair (L) Exonuclease I (degrades ssDNA)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01141 7 exodeoxyribonuclease I [EC:3.1.11.1] Mismatch repair -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00929 7 Exonuclease
PF08411 7 Exonuclease C-terminal

Annotations of the 5 SwissProt hits

Annotation Number of occurrences
Exodeoxyribonuclease I 5

Protein length

Min length 472
Max length 476
Mean length (sd) 472.6 (1.5)
Median length 472.0

Protein length distribution