Orthogroup:group_1968


Homologs in group_1968

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14760 FBDBKF_14760 Morganella morganii S1 rne ribonuclease E
EHELCC_15565 EHELCC_15565 Morganella morganii S2 rne ribonuclease E
NLDBIP_16095 NLDBIP_16095 Morganella morganii S4 rne ribonuclease E
LHKJJB_15745 LHKJJB_15745 Morganella morganii S3 rne ribonuclease E
HKOGLL_14865 HKOGLL_14865 Morganella morganii S5 rne ribonuclease E
F4V73_RS07555 F4V73_RS07555 Morganella psychrotolerans rne ribonuclease E
PMI_RS04180 PMI_RS04180 Proteus mirabilis HI4320 rne ribonuclease E

Distribution of group_1968 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1968 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1968

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1968.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rne 7

Product

# Product Occurence
1 ribonuclease E 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1530 7 J Translation, ribosomal structure and biogenesis (J) Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K08300 7 ribonuclease E [EC:3.1.26.12] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00575 7 S1 RNA binding domain
PF10150 7 Ribonuclease E/G family
PF12111 1 Polyribonucleotide phosphorylase C terminal
PF20833 7 RNase E/G, Thioredoxin-like domain

Annotations of the 20 SwissProt hits

Annotation Number of occurrences
Putative ribonuclease E 1
Ribonuclease E 8
Ribonuclease E/G-like protein 4
Ribonuclease E/G-like protein, chloroplastic 1
Ribonuclease G 6

Protein length

Min length 1054
Max length 1173
Mean length (sd) 1073.3 (44.4)
Median length 1054.0

Protein length distribution