Orthogroup:group_1956


Homologs in group_1956

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14670 FBDBKF_14670 Morganella morganii S1 lpoB penicillin-binding protein activator LpoB
EHELCC_15475 EHELCC_15475 Morganella morganii S2 lpoB penicillin-binding protein activator LpoB
NLDBIP_16005 NLDBIP_16005 Morganella morganii S4 lpoB penicillin-binding protein activator LpoB
LHKJJB_15835 LHKJJB_15835 Morganella morganii S3 lpoB penicillin-binding protein activator LpoB
HKOGLL_14955 HKOGLL_14955 Morganella morganii S5 lpoB penicillin-binding protein activator LpoB
F4V73_RS07465 F4V73_RS07465 Morganella psychrotolerans lpoB penicillin-binding protein activator LpoB
PMI_RS04275 PMI_RS04275 Proteus mirabilis HI4320 - penicillin-binding protein activator LpoB

Distribution of group_1956 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1956 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1956

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1956.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lpoB 6
2 - 1

Product

# Product Occurence
1 penicillin-binding protein activator LpoB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3417 7 M Cell wall/membrane/envelope biogenesis (M) Outer membrane lipoprotein LpoB, binds and activates PBP1b

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07337 7 penicillin-binding protein activator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13036 7 Peptidoglycan-synthase activator LpoB

Annotations of the 22 SwissProt hits

Annotation Number of occurrences
Penicillin-binding protein activator LpoB 22

Protein length

Min length 193
Max length 195
Mean length (sd) 194.4 (1.0)
Median length 195.0

Protein length distribution