Orthogroup:group_1938


Homologs in group_1938

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14550 FBDBKF_14550 Morganella morganii S1 rluE 23S rRNA pseudouridine(2457) synthase RluE
EHELCC_15355 EHELCC_15355 Morganella morganii S2 rluE 23S rRNA pseudouridine(2457) synthase RluE
NLDBIP_15885 NLDBIP_15885 Morganella morganii S4 rluE 23S rRNA pseudouridine(2457) synthase RluE
LHKJJB_15955 LHKJJB_15955 Morganella morganii S3 rluE 23S rRNA pseudouridine(2457) synthase RluE
HKOGLL_15075 HKOGLL_15075 Morganella morganii S5 rluE 23S rRNA pseudouridine(2457) synthase RluE
F4V73_RS07345 F4V73_RS07345 Morganella psychrotolerans rluE 23S rRNA pseudouridine(2457) synthase RluE
PMI_RS04375 PMI_RS04375 Proteus mirabilis HI4320 rluE 23S rRNA pseudouridine(2457) synthase RluE

Distribution of group_1938 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1938 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1938

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1938.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rluE 7

Product

# Product Occurence
1 23S rRNA pseudouridine(2457) synthase RluE 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1187 7 J Translation, ribosomal structure and biogenesis (J) Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06181 7 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00849 7 RNA pseudouridylate synthase

Annotations of the 74 SwissProt hits

Annotation Number of occurrences
Dual-specificity RNA pseudouridine synthase RluA 1
Dual-specificity RNA pseudouridine synthase RluF 6
Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 1
Ribosomal large subunit pseudouridine synthase B 21
Ribosomal large subunit pseudouridine synthase E 15
Ribosomal small subunit pseudouridine synthase A 13
Uncharacterized RNA pseudouridine synthase BB_0129 1
Uncharacterized RNA pseudouridine synthase HP_1459 1
Uncharacterized RNA pseudouridine synthase ML1370 1
Uncharacterized RNA pseudouridine synthase MT1751.1 1
Uncharacterized RNA pseudouridine synthase Mb1738 1
Uncharacterized RNA pseudouridine synthase RBE_0321 1
Uncharacterized RNA pseudouridine synthase RC0807 1
Uncharacterized RNA pseudouridine synthase RF_0863 1
Uncharacterized RNA pseudouridine synthase RP544 1
Uncharacterized RNA pseudouridine synthase RT0532 1
Uncharacterized RNA pseudouridine synthase Rv1711 1
Uncharacterized RNA pseudouridine synthase YtzG 1
Uncharacterized RNA pseudouridine synthase aq_1464 1
Uncharacterized RNA pseudouridine synthase aq_554 1
Uncharacterized RNA pseudouridine synthase jhp_1352 1
Uncharacterized RNA pseudouridine synthase slr0361 1
Uncharacterized RNA pseudouridine synthase slr0612 1

Protein length

Min length 209
Max length 229
Mean length (sd) 223.9 (8.9)
Median length 229.0

Protein length distribution