Orthogroup:group_1801


Homologs in group_1801

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13370 FBDBKF_13370 Morganella morganii S1 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
EHELCC_08725 EHELCC_08725 Morganella morganii S2 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
NLDBIP_09050 NLDBIP_09050 Morganella morganii S4 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
LHKJJB_05215 LHKJJB_05215 Morganella morganii S3 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
HKOGLL_05700 HKOGLL_05700 Morganella morganii S5 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
F4V73_RS03390 F4V73_RS03390 Morganella psychrotolerans arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
PMI_RS05080 PMI_RS05080 Proteus mirabilis HI4320 arnA bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA

Distribution of group_1801 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1801 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1801

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1801.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 arnA 7

Product

# Product Occurence
1 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0223 7 J Translation, ribosomal structure and biogenesis (J) Methionyl-tRNA formyltransferase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K10011 7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] Amino sugar and nucleotide sugar metabolism
Metabolic pathways
Biosynthesis of nucleotide sugars
Cationic antimicrobial peptide (CAMP) resistance		 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00551 7 Formyl transferase
PF01370 7 NAD dependent epimerase/dehydratase family
PF02911 7 Formyl transferase, C-terminal domain

Annotations of the 550 SwissProt hits

Annotation Number of occurrences
Bifunctional polymyxin resistance protein ArnA 74
Methionyl-tRNA formyltransferase 466
Putative bifunctional polymyxin resistance protein ArnA 1
UDP-D-apiose/UDP-D-xylose synthase 1
UDP-D-apiose/UDP-D-xylose synthase 1 1
UDP-D-apiose/UDP-D-xylose synthase 2 1
UDP-glucuronic acid decarboxylase 1 6

Protein length

Min length 660
Max length 661
Mean length (sd) 660.9 (0.4)
Median length 661.0

Protein length distribution