Orthogroup:group_169


Homologs in group_169

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17540 FBDBKF_17540 Morganella morganii S1 tuf elongation factor Tu
EHELCC_19980 EHELCC_19980 Morganella morganii S2 - hypothetical protein
NLDBIP_19970 NLDBIP_19970 Morganella morganii S4 - hypothetical protein
LHKJJB_19935 LHKJJB_19935 Morganella morganii S3 - hypothetical protein
HKOGLL_19750 HKOGLL_19750 Morganella morganii S5 - hypothetical protein
F4V73_RS14925 F4V73_RS14925 Morganella psychrotolerans tuf elongation factor Tu
F4V73_RS18900 F4V73_RS18900 Morganella psychrotolerans tuf elongation factor Tu
PMI_RS11060 PMI_RS11060 Proteus mirabilis HI4320 cysN sulfate adenylyltransferase subunit CysN
PMI_RS13790 PMI_RS13790 Proteus mirabilis HI4320 tuf elongation factor Tu
PMI_RS16130 PMI_RS16130 Proteus mirabilis HI4320 tuf elongation factor Tu

Distribution of group_169 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_169 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_169

Orthogroup content: 10 members

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This page summarizes the annotation of all members of the orthologous group group_169.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tuf 5
2 - 4
3 cysN 1

Product

# Product Occurence
1 elongation factor Tu 5
2 hypothetical protein 4
3 sulfate adenylyltransferase subunit CysN 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0050 9 J Translation, ribosomal structure and biogenesis (J) Translation elongation factor EF-Tu, a GTPase
COG2895 1 P Inorganic ion transport and metabolism (P) Sulfate adenylyltransferase subunit 1, EFTu-like GTPase family

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00009 5 Elongation factor Tu GTP binding domain
PF03143 9 Elongation factor Tu C-terminal domain
PF03144 5 Elongation factor Tu domain 2
PF22594 1 GTP-eEF1A C-terminal domain-like

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG046459 2 elongation factor Tu VF0460 Adherence
VFG046474 7 elongation factor Tu VF0460 Adherence

Annotations of the 1013 SwissProt hits

Annotation Number of occurrences
Bifunctional enzyme CysN/CysC 6
Bifunctional enzyme NodQ 5
Elongation factor 1 alpha-like protein 2
Elongation factor 1-alpha 115
Elongation factor 1-alpha (Fragment) 11
Elongation factor 1-alpha 1 17
Elongation factor 1-alpha 2 11
Elongation factor 1-alpha 3 2
Elongation factor 1-alpha 4 2
Elongation factor 1-alpha C 1
Elongation factor 1-alpha S 1
Elongation factor 1-alpha, oocyte form 2
Elongation factor 1-alpha, somatic form 1
Elongation factor 1-alpha-A 1
Elongation factor 1-alpha-B 1
Elongation factor 1-alpha-B/C 1
Elongation factor Tu 553
Elongation factor Tu (Fragment) 3
Elongation factor Tu 1 56
Elongation factor Tu 2 56
Elongation factor Tu, chloroplastic 16
Elongation factor Tu, cyanelle 1
Elongation factor Tu, mitochondrial 7
Elongation factor Tu, plastid 1
Elongation factor Tu-1 3
Elongation factor Tu-2 1
Elongation factor Tu-3 2
Elongation factor Tu-A 8
Elongation factor Tu-B 7
Eukaryotic peptide chain release factor GTP-binding subunit 9
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 2
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 3
HBS1-like protein 5
Protein HBS1 1
Putative elongation factor 1-alpha-like 3 1
Selenocysteine-specific elongation factor 1
Sulfate adenylyltransferase subunit 1 98

Protein length

Min length 45
Max length 485
Mean length (sd) 248.4 (184.5)
Median length 318.5

Protein length distribution