Orthogroup:group_1609


Homologs in group_1609

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10555 FBDBKF_10555 Morganella morganii S1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
EHELCC_14890 EHELCC_14890 Morganella morganii S2 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
NLDBIP_14720 NLDBIP_14720 Morganella morganii S4 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
LHKJJB_14625 LHKJJB_14625 Morganella morganii S3 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
HKOGLL_13245 HKOGLL_13245 Morganella morganii S5 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
F4V73_RS14265 F4V73_RS14265 Morganella psychrotolerans - TRAP transporter large permease
PMI_RS05130 PMI_RS05130 Proteus mirabilis HI4320 - TRAP transporter permease

Distribution of group_1609 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1609 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1609

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1609.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dctQ 5
2 - 2

Product

# Product Occurence
1 TRAP-type C4-dicarboxylate transport system, large permease component 5
2 TRAP transporter large permease 1
3 TRAP transporter permease 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1593 6 G Carbohydrate transport and metabolism (G) TRAP-type C4-dicarboxylate transport system, large permease component
COG4666 1 R General function prediction only (R) TRAP-type uncharacterized transport system, fused permease components

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11690 6 C4-dicarboxylate transporter, DctM subunit Two-component system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06808 7 Tripartite ATP-independent periplasmic transporter, DctM component

Annotations of the 16 SwissProt hits

Annotation Number of occurrences
2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN 1
C4-dicarboxylate TRAP transporter large permease protein DctM 3
Ectoine TRAP transporter large permease protein TeaC 1
Ectoine/5-hydroxyectoine TRAP transporter large permease protein UehC 1
Isethionate TRAP transporter permease protein DctMQ 1
Putative TRAP transporter large permease protein HI_0050 1
Putative TRAP transporter large permease protein HI_1029 1
Putative dicarboxylate transporter subunit (Fragment) 1
Sialic acid TRAP transporter large permease protein SiaM 1
Sialic acid TRAP transporter permease protein SiaT 3
Uncharacterized protein YgiK 1
Uncharacterized protein y4mL 1

Protein length

Min length 436
Max length 655
Mean length (sd) 467.3 (82.8)
Median length 436.0

Protein length distribution