COG4785


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4785, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipoprotein NlpI, contains TPR repeats
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4785 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1409 FBDBKF_08700 121484 122371 1 nlpI lipoprotein NlpI Morganella morganii S1
1 group_1409 EHELCC_12825 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S2
2 group_1409 NLDBIP_13165 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S4
3 group_1409 LHKJJB_13390 120202 121089 1 nlpI lipoprotein NlpI Morganella morganii S3
4 group_1409 HKOGLL_11640 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S5
5 group_1409 F4V73_RS09920 88668 89555 1 nlpI lipoprotein NlpI Morganella psychrotolerans
6 group_1409 PMI_RS17050 3752031 3752918 1 nlpI lipoprotein NlpI Proteus mirabilis HI4320