COG0130


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0130, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0130 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1406 FBDBKF_08680 117644 118588 1 truB tRNA pseudouridine(55) synthase TruB Morganella morganii S1
1 group_1406 EHELCC_12845 45137 46081 -1 truB tRNA pseudouridine(55) synthase TruB Morganella morganii S2
2 group_1406 NLDBIP_13185 45137 46081 -1 truB tRNA pseudouridine(55) synthase TruB Morganella morganii S4
3 group_1406 LHKJJB_13370 116362 117306 1 truB tRNA pseudouridine(55) synthase TruB Morganella morganii S3
4 group_1406 HKOGLL_11660 45137 46081 -1 truB tRNA pseudouridine(55) synthase TruB Morganella morganii S5
5 group_1406 F4V73_RS09905 84811 85767 1 truB tRNA pseudouridine(55) synthase TruB Morganella psychrotolerans
6 group_1406 PMI_RS17035 3748169 3749125 1 truB tRNA pseudouridine(55) synthase TruB Proteus mirabilis HI4320