Orthogroup:group_1397


Homologs in group_1397

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08625 FBDBKF_08625 Morganella morganii S1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
EHELCC_12900 EHELCC_12900 Morganella morganii S2 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
NLDBIP_13240 NLDBIP_13240 Morganella morganii S4 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
LHKJJB_13315 LHKJJB_13315 Morganella morganii S3 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
HKOGLL_11715 HKOGLL_11715 Morganella morganii S5 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
F4V73_RS09850 F4V73_RS09850 Morganella psychrotolerans rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
PMI_RS16980 PMI_RS16980 Proteus mirabilis HI4320 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE

Distribution of group_1397 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1397 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1397

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1397.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlmE 7

Product

# Product Occurence
1 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0293 7 J Translation, ribosomal structure and biogenesis (J) 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02427 7 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01728 7 FtsJ-like methyltransferase

Annotations of the 447 SwissProt hits

Annotation Number of occurrences
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase 1
AdoMet-dependent rRNA methyltransferase SPB1 10
AdoMet-dependent rRNA methyltransferase spb1 4
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
Putative ribosomal RNA methyltransferase PB17E12.10c 1
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
Ribosomal RNA large subunit methyltransferase E 407
Ribosomal RNA large subunit methyltransferase M 2
pre-rRNA 2'-O-ribose RNA methyltransferase 1
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 5
rRNA methyltransferase 2, mitochondrial 7
tRNA (cytidine(32)-2'-O)-methyltransferase 1
tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 4
tRNA (guanosine(34)-2'-O)-methyltransferase 1

Protein length

Unique protein length 209

Protein length distribution