Orthogroup:group_1387


Homologs in group_1387

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08565 FBDBKF_08565 Morganella morganii S1 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase
EHELCC_12960 EHELCC_12960 Morganella morganii S2 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase
NLDBIP_13300 NLDBIP_13300 Morganella morganii S4 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase
LHKJJB_13255 LHKJJB_13255 Morganella morganii S3 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase
HKOGLL_11775 HKOGLL_11775 Morganella morganii S5 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase
F4V73_RS09790 F4V73_RS09790 Morganella psychrotolerans mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
PMI_RS16915 PMI_RS16915 Proteus mirabilis HI4320 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase

Distribution of group_1387 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1387 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1387

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1387.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mpl 7

Product

# Product Occurence
1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 5
2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0773 7 M Cell wall/membrane/envelope biogenesis (M) UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02558 7 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01225 7 Mur ligase family, catalytic domain
PF02875 7 Mur ligase, glutamate ligase domain
PF08245 7 Mur ligase middle domain

Annotations of the 552 SwissProt hits

Annotation Number of occurrences
Bifunctional enzyme MurC/Ddl 1
UDP-N-acetylmuramate--L-alanine ligase 549
UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase 2

Protein length

Min length 450
Max length 459
Mean length (sd) 451.3 (3.4)
Median length 450.0

Protein length distribution