Orthogroup:group_1308


Homologs in group_1308

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08010 FBDBKF_08010 Morganella morganii S1 pcnB polynucleotide adenylyltransferase PcnB
EHELCC_13840 EHELCC_13840 Morganella morganii S2 pcnB polynucleotide adenylyltransferase PcnB
NLDBIP_14285 NLDBIP_14285 Morganella morganii S4 pcnB polynucleotide adenylyltransferase PcnB
LHKJJB_08565 LHKJJB_08565 Morganella morganii S3 pcnB polynucleotide adenylyltransferase PcnB
HKOGLL_08115 HKOGLL_08115 Morganella morganii S5 pcnB polynucleotide adenylyltransferase PcnB
F4V73_RS12975 F4V73_RS12975 Morganella psychrotolerans pcnB polynucleotide adenylyltransferase PcnB
PMI_RS00955 PMI_RS00955 Proteus mirabilis HI4320 pcnB polynucleotide adenylyltransferase PcnB

Distribution of group_1308 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1308 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1308

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1308.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pcnB 7

Product

# Product Occurence
1 polynucleotide adenylyltransferase PcnB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0617 7 J Translation, ribosomal structure and biogenesis (J) tRNA nucleotidyltransferase/poly(A) polymerase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00970 7 poly(A) polymerase [EC:2.7.7.19] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01743 7 Poly A polymerase head domain
PF12626 7 Polymerase A arginine-rich C-terminus
PF12627 7 Probable RNA and SrmB- binding site of polymerase A

Annotations of the 344 SwissProt hits

Annotation Number of occurrences
A-adding tRNA nucleotidyltransferase 5
CC-adding tRNA nucleotidyltransferase 7
CCA tRNA nucleotidyltransferase 1, mitochondrial 3
CCA tRNA nucleotidyltransferase, mitochondrial 2
CCA-adding enzyme 121
CCA-adding enzyme (Fragment) 1
Multifunctional CCA protein 196
Nucleotidyltransferase lcsQ 1
Poly(A) polymerase I 6
tRNA nucleotidyltransferase cca1 1
tRNA nucleotidyltransferase cca2 1

Protein length

Min length 451
Max length 507
Mean length (sd) 466.0 (25.7)
Median length 451.0

Protein length distribution