COG0017


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0017, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Aspartyl/asparaginyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0017 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1247 FBDBKF_07260 130255 131655 -1 asnS asparagine--tRNA ligase Morganella morganii S1
1 group_1247 EHELCC_03710 54531 55931 1 asnS asparagine--tRNA ligase Morganella morganii S2
2 group_1247 NLDBIP_03710 54327 55727 1 asnS asparagine--tRNA ligase Morganella morganii S4
3 group_1247 LHKJJB_09540 54441 55841 1 asnS asparagine--tRNA ligase Morganella morganii S3
4 group_1247 HKOGLL_09435 135211 136611 -1 asnS asparagine--tRNA ligase Morganella morganii S5
5 group_1247 F4V73_RS01445 318292 319692 -1 asnS asparagine--tRNA ligase Morganella psychrotolerans
6 group_1247 PMI_RS03765 850182 851582 -1 asnS asparagine--tRNA ligase Proteus mirabilis HI4320