COG0539


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0539, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S1
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0539 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1229 FBDBKF_07160 104223 105896 1 rpsA 30S ribosomal protein S1 Morganella morganii S1
1 group_1229 EHELCC_03810 80290 81963 -1 rpsA 30S ribosomal protein S1 Morganella morganii S2
2 group_1229 NLDBIP_03810 80086 81759 -1 rpsA 30S ribosomal protein S1 Morganella morganii S4
3 group_1229 LHKJJB_09640 80200 81873 -1 rpsA 30S ribosomal protein S1 Morganella morganii S3
4 group_1229 HKOGLL_09335 109179 110852 1 rpsA 30S ribosomal protein S1 Morganella morganii S5
5 group_1229 F4V73_RS01345 292246 293919 1 rpsA 30S ribosomal protein S1 Morganella psychrotolerans
6 group_1229 PMI_RS03515 783718 785391 1 rpsA 30S ribosomal protein S1 Proteus mirabilis HI4320