Orthogroup:group_1256


Homologs in group_1256

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07320 FBDBKF_07320 Morganella morganii S1 rmf ribosome modulation factor
EHELCC_03650 EHELCC_03650 Morganella morganii S2 rmf ribosome modulation factor
NLDBIP_03650 NLDBIP_03650 Morganella morganii S4 rmf ribosome modulation factor
LHKJJB_09480 LHKJJB_09480 Morganella morganii S3 rmf ribosome modulation factor
HKOGLL_09495 HKOGLL_09495 Morganella morganii S5 rmf ribosome modulation factor
F4V73_RS01505 F4V73_RS01505 Morganella psychrotolerans rmf ribosome modulation factor
PMI_RS03835 PMI_RS03835 Proteus mirabilis HI4320 rmf ribosome modulation factor

Distribution of group_1256 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1256 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1256

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1256.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rmf 7

Product

# Product Occurence
1 ribosome modulation factor 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3130 7 J Translation, ribosomal structure and biogenesis (J) Ribosome modulation factor

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03812 7 ribosome modulation factor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04957 7 Ribosome modulation factor

Annotations of the 22 SwissProt hits

Annotation Number of occurrences
Ribosome modulation factor 20
Ribosome modulation factor 1 1
Ribosome modulation factor 2 1

Protein length

Min length 55
Max length 56
Mean length (sd) 55.1 (0.4)
Median length 55.0

Protein length distribution