Orthogroup:group_1253


Homologs in group_1253

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07295 FBDBKF_07295 Morganella morganii S1 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
EHELCC_03675 EHELCC_03675 Morganella morganii S2 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
NLDBIP_03675 NLDBIP_03675 Morganella morganii S4 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
LHKJJB_09505 LHKJJB_09505 Morganella morganii S3 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
HKOGLL_09470 HKOGLL_09470 Morganella morganii S5 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
F4V73_RS01480 F4V73_RS01480 Morganella psychrotolerans rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL
PMI_RS03805 PMI_RS03805 Proteus mirabilis HI4320 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL

Distribution of group_1253 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1253 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1253

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1253.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlmL 5
2 rlmKL 2

Product

# Product Occurence
1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0116 7 J Translation, ribosomal structure and biogenesis (J) 23S rRNA G2445 N2-methylase RlmL

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12297 7 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01170 7 RMKL-like, methyltransferase domain
PF02926 7 THUMP domain
PF10672 7 S-adenosylmethionine-dependent methyltransferase
PF22020 7 RlmL ferredoxin-like domain

Annotations of the 260 SwissProt hits

Annotation Number of occurrences
Putative RNA methyltransferase YpsC 1
Putative RNA methyltransferase slr0064 1
Putative ribosomal RNA large subunit methyltransferase MJ1649 1
Putative ribosomal RNA large subunit methyltransferase MJ1653 1
Putative ribosomal RNA large subunit methyltransferase YwbD 1
Putative uncharacterized protein DDB_G0293380 1
Ribosomal RNA large subunit methyltransferase DR_0049 1
Ribosomal RNA large subunit methyltransferase I 82
Ribosomal RNA large subunit methyltransferase K 1
Ribosomal RNA large subunit methyltransferase K/L 165
Ribosomal RNA large subunit methyltransferase L 1
THUMP domain-containing protein 2 1
tRNA (guanine(6)-N2)-methyltransferase 3

Protein length

Min length 704
Max length 705
Mean length (sd) 704.7 (0.5)
Median length 705.0

Protein length distribution