COG0143


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0143, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Methionyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0143 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1184 FBDBKF_06825 27830 29863 -1 metG methionine--tRNA ligase Morganella morganii S1
1 group_1184 EHELCC_04145 156323 158356 1 metG methionine--tRNA ligase Morganella morganii S2
2 group_1184 NLDBIP_04145 156119 158152 1 metG methionine--tRNA ligase Morganella morganii S4
3 group_1184 LHKJJB_09975 156233 158266 1 metG methionine--tRNA ligase Morganella morganii S3
4 group_1184 HKOGLL_09000 32786 34819 -1 metG methionine--tRNA ligase Morganella morganii S5
5 group_1184 F4V73_RS00975 206387 208420 -1 metG methionine--tRNA ligase Morganella psychrotolerans
6 group_1184 PMI_RS03185 702245 704272 -1 metG methionine--tRNA ligase Proteus mirabilis HI4320