Orthogroup:group_1200


Homologs in group_1200

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06940 FBDBKF_06940 Morganella morganii S1 wcaG Nucleoside-diphosphate-sugar epimerase
EHELCC_04030 EHELCC_04030 Morganella morganii S2 wcaG Nucleoside-diphosphate-sugar epimerase
NLDBIP_04030 NLDBIP_04030 Morganella morganii S4 wcaG Nucleoside-diphosphate-sugar epimerase
LHKJJB_09860 LHKJJB_09860 Morganella morganii S3 wcaG Nucleoside-diphosphate-sugar epimerase
HKOGLL_09115 HKOGLL_09115 Morganella morganii S5 wcaG Nucleoside-diphosphate-sugar epimerase
F4V73_RS01125 F4V73_RS01125 Morganella psychrotolerans - SDR family oxidoreductase
PMI_RS03280 PMI_RS03280 Proteus mirabilis HI4320 - SDR family oxidoreductase

Distribution of group_1200 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1200 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1200

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1200.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 wcaG 5
2 - 2

Product

# Product Occurence
1 Nucleoside-diphosphate-sugar epimerase 5
2 SDR family oxidoreductase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0451 7 M Cell wall/membrane/envelope biogenesis (M) Nucleoside-diphosphate-sugar epimerase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01370 7 NAD dependent epimerase/dehydratase family

Annotations of the 3 SwissProt hits

Annotation Number of occurrences
Protein YeeZ 2
dTDP-glucose 4,6-dehydratase 1

Protein length

Min length 273
Max length 275
Mean length (sd) 274.7 (0.8)
Median length 275.0

Protein length distribution