COG3022


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3022, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding protein YaaA associated with the oxidative stress response
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG3022 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1138 FBDBKF_06515 142521 143312 1 yaaA peroxide stress protein YaaA Morganella morganii S1
1 group_1138 EHELCC_09560 143093 143884 1 yaaA peroxide stress protein YaaA Morganella morganii S2
2 group_1138 NLDBIP_09940 143093 143884 1 yaaA peroxide stress protein YaaA Morganella morganii S4
3 group_1138 LHKJJB_07815 73354 74145 -1 yaaA peroxide stress protein YaaA Morganella morganii S3
4 group_1138 HKOGLL_07365 73354 74145 -1 yaaA peroxide stress protein YaaA Morganella morganii S5
5 group_1138 F4V73_RS15415 70226 70999 -1 yaaA peroxide stress protein YaaA Morganella psychrotolerans
6 group_1138 PMI_RS00025 13618 14403 -1 yaaA peroxide stress protein YaaA Proteus mirabilis HI4320