Orthogroup:group_1195


Homologs in group_1195

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06465 FBDBKF_06465 Morganella morganii S1 nhaR transcriptional activator NhaR
EHELCC_09510 EHELCC_09510 Morganella morganii S2 nhaR transcriptional activator NhaR
NLDBIP_09890 NLDBIP_09890 Morganella morganii S4 nhaR transcriptional activator NhaR
LHKJJB_07865 LHKJJB_07865 Morganella morganii S3 nhaR transcriptional activator NhaR
HKOGLL_07415 HKOGLL_07415 Morganella morganii S5 nhaR transcriptional activator NhaR
F4V73_RS15460 F4V73_RS15460 Morganella psychrotolerans nhaR transcriptional activator NhaR
PMI_RS00060 PMI_RS00060 Proteus mirabilis HI4320 nhaR transcriptional activator NhaR

Distribution of group_1195 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1195 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1195

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1195.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nhaR 7

Product

# Product Occurence
1 transcriptional activator NhaR 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03717 7 LysR family transcriptional regulator, transcriptional activator of nhaA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 127 SwissProt hits

Annotation Number of occurrences
Glycine cleavage system transcriptional activator 3
HTH-type transcriptional activator AmpR 1
HTH-type transcriptional activator TtdR 2
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CbbR 1
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CzcR 7
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator EstR 1
HTH-type transcriptional regulator GbpR 1
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator MetR 1
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PecT 1
HTH-type transcriptional regulator PerR 1
HTH-type transcriptional regulator PtxR 1
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator YofA 2
Iron-regulated virulence regulatory protein IrgB 2
Lysine export transcriptional regulatory protein LysG 1
Malonate utilization transcriptional regulator 1
Nitrogen assimilation regulatory protein nac 2
Octopine catabolism/uptake operon regulatory protein OccR 2
Probable RuBisCO transcriptional regulator 13
RuBisCO operon transcriptional regulator 2
Transcriptional activator protein NhaR 3
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator YbdO 1
Uncharacterized HTH-type transcriptional regulator YeiE 3
Uncharacterized HTH-type transcriptional regulator YoaU 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YwqM 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1

Protein length

Min length 298
Max length 309
Mean length (sd) 307.4 (4.2)
Median length 309.0

Protein length distribution