Orthogroup:group_1127


Homologs in group_1127

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06435 FBDBKF_06435 Morganella morganii S1 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
EHELCC_09480 EHELCC_09480 Morganella morganii S2 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
NLDBIP_09860 NLDBIP_09860 Morganella morganii S4 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
LHKJJB_07895 LHKJJB_07895 Morganella morganii S3 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
HKOGLL_07445 HKOGLL_07445 Morganella morganii S5 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
F4V73_RS15490 F4V73_RS15490 Morganella psychrotolerans ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
PMI_RS00090 PMI_RS00090 Proteus mirabilis HI4320 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Distribution of group_1127 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1127 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1127

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1127.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispH 7

Product

# Product Occurence
1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0761 7 I Lipid transport and metabolism (I) 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03527 7 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] Terpenoid backbone biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 C5 isoprenoid biosynthesis, non-mevalonate pathway

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02401 7 LytB protein

Annotations of the 443 SwissProt hits

Annotation Number of occurrences
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 422
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (Fragment) 1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 7
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 7
4-hydroxy-3-methylbut-2-enyl diphosphate reductase, apicoplast 1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4
Putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase homolog 1

Protein length

Min length 316
Max length 317
Mean length (sd) 316.1 (0.4)
Median length 316.0

Protein length distribution