Orthogroup:group_1106



Homologs in group_1106

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06305 FBDBKF_06305 Morganella morganii S1 parC DNA topoisomerase IV subunit A
EHELCC_09350 EHELCC_09350 Morganella morganii S2 parC DNA topoisomerase IV subunit A
NLDBIP_09730 NLDBIP_09730 Morganella morganii S4 parC DNA topoisomerase IV subunit A
LHKJJB_08025 LHKJJB_08025 Morganella morganii S3 parC DNA topoisomerase IV subunit A
HKOGLL_07575 HKOGLL_07575 Morganella morganii S5 parC DNA topoisomerase IV subunit A
F4V73_RS15615 F4V73_RS15615 Morganella psychrotolerans parC DNA topoisomerase IV subunit A
PMI_RS19660 PMI_RS19660 Proteus mirabilis HI4320 - DNA gyrase C-terminal beta-propeller domain-containing protein

Distribution of group_1106 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1106 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1106

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1106.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 parC 6
2 - 1

Product

# Product Occurence
1 DNA topoisomerase IV subunit A 6
2 DNA gyrase C-terminal beta-propeller domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0188 7 L Replication, recombination and repair (L) DNA gyrase/topoisomerase IV, subunit A

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02621 6 topoisomerase IV subunit A [EC:5.6.2.2] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00521 6 DNA gyrase/topoisomerase IV, subunit A
PF03989 7 DNA gyrase C-terminal domain, beta-propeller

Annotations of the 158 SwissProt hits

Annotation Number of occurrences
DNA gyrase subunit A 76
DNA gyrase subunit A (Fragment) 7
DNA gyrase subunit A, chloroplastic/mitochondrial 2
DNA topoisomerase 2 18
DNA topoisomerase 2 top-2 1
DNA topoisomerase 2, mitochondrial 1
DNA topoisomerase 2-alpha 6
DNA topoisomerase 2-beta 4
DNA topoisomerase 4 subunit A 35
DNA topoisomerase 4 subunit A (Fragment) 1
DNA topoisomerase medium subunit 1
DNA topoisomerase-like protein cin-4 1
Probable DNA gyrase subunit A, chloroplastic/mitochondrial 1
Probable DNA topoisomerase 2 1
Putative DNA topoisomerase 2, mitochondrial 1
Topoisomerase subunit TopoM 1
Type 2 topoisomerase subunit A 1

Protein length

Min length 149
Max length 753
Mean length (sd) 666.7 (228.3)
Median length 753.0

Protein length distribution