Orthogroup:group_1100


Homologs in group_1100

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06260 FBDBKF_06260 Morganella morganii S1 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
EHELCC_09305 EHELCC_09305 Morganella morganii S2 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
NLDBIP_09685 NLDBIP_09685 Morganella morganii S4 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
LHKJJB_08070 LHKJJB_08070 Morganella morganii S3 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
HKOGLL_07620 HKOGLL_07620 Morganella morganii S5 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
F4V73_RS15660 F4V73_RS15660 Morganella psychrotolerans pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
PMI_RS11540 PMI_RS11540 Proteus mirabilis HI4320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA

Distribution of group_1100 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1100 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1100

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1100.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pdxA 7

Product

# Product Occurence
1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1995 7 H Coenzyme transport and metabolism (H) 4-hydroxy-L-threonine phosphate dehydrogenase PdxA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00097 7 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] Vitamin B6 metabolism
Metabolic pathways
Biosynthesis of cofactors		 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04166 7 Pyridoxal phosphate biosynthetic protein PdxA

Annotations of the 160 SwissProt hits

Annotation Number of occurrences
1,2-dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase 2
4-hydroxythreonine-4-phosphate dehydrogenase 133
4-hydroxythreonine-4-phosphate dehydrogenase (Fragment) 1
D-erythronate 4-phosphate dehydrogenase 1
D-threonate 4-phosphate dehydrogenase 4
Putative 4-hydroxythreonine-4-phosphate dehydrogenase 2
Putative 4-hydroxythreonine-4-phosphate dehydrogenase 2 2
Putative D-threonate 4-phosphate dehydrogenase 15

Protein length

Min length 332
Max length 333
Mean length (sd) 332.1 (0.4)
Median length 332.0

Protein length distribution