Orthogroup:group_1098


Homologs in group_1098

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06250 FBDBKF_06250 Morganella morganii S1 lptD LPS assembly protein LptD
EHELCC_09295 EHELCC_09295 Morganella morganii S2 lptD LPS assembly protein LptD
NLDBIP_09675 NLDBIP_09675 Morganella morganii S4 lptD LPS assembly protein LptD
LHKJJB_08080 LHKJJB_08080 Morganella morganii S3 lptD LPS assembly protein LptD
HKOGLL_07630 HKOGLL_07630 Morganella morganii S5 lptD LPS assembly protein LptD
F4V73_RS15670 F4V73_RS15670 Morganella psychrotolerans lptD LPS assembly protein LptD
PMI_RS11530 PMI_RS11530 Proteus mirabilis HI4320 lptD LPS assembly protein LptD

Distribution of group_1098 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1098 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1098

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1098.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lptD 7

Product

# Product Occurence
1 LPS assembly protein LptD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1452 7 M Cell wall/membrane/envelope biogenesis (M) LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04744 7 LPS-assembly protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03968 7 LptA/(LptD N-terminal domain) LPS transport protein
PF04453 7 LPS transport system D

Annotations of the 126 SwissProt hits

Annotation Number of occurrences
LPS-assembly protein LptD 126

Protein length

Min length 786
Max length 788
Mean length (sd) 786.6 (1.0)
Median length 786.0

Protein length distribution