COG2240


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2240, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Pyridoxal/pyridoxine/pyridoxamine kinase
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG2240 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1013 FBDBKF_05660 139234 140100 -1 pdxY pyridoxal kinase PdxY Morganella morganii S1
1 group_1013 EHELCC_11930 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S2
2 group_1013 NLDBIP_12270 41349 42215 1 pdxY pyridoxal kinase PdxY Morganella morganii S4
3 group_1013 LHKJJB_12130 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S3
4 group_1013 HKOGLL_10745 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S5
5 group_1013 F4V73_RS03645 774859 775725 1 pdxY pyridoxal kinase PdxY Morganella psychrotolerans
6 group_1013 PMI_RS06690 1463166 1464035 -1 pdxY pyridoxal kinase PdxY Proteus mirabilis HI4320