Orthogroup:group_1078


Homologs in group_1078

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06115 FBDBKF_06115 Morganella morganii S1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
EHELCC_09160 EHELCC_09160 Morganella morganii S2 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
NLDBIP_09540 NLDBIP_09540 Morganella morganii S4 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
LHKJJB_08215 LHKJJB_08215 Morganella morganii S3 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
HKOGLL_07765 HKOGLL_07765 Morganella morganii S5 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
F4V73_RS15800 F4V73_RS15800 Morganella psychrotolerans tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
PMI_RS11380 PMI_RS11380 Proteus mirabilis HI4320 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA

Distribution of group_1078 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1078 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1078

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1078.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tcdA 7

Product

# Product Occurence
1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1179 7 J Translation, ribosomal structure and biogenesis (J) tRNA A37 threonylcarbamoyladenosine dehydratase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K22132 7 tRNA threonylcarbamoyladenosine dehydratase - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00899 7 ThiF family

Annotations of the 127 SwissProt hits

Annotation Number of occurrences
Adenylyltransferase and sulfurtransferase MOCS3 23
Adenylyltransferase and sulfurtransferase MOCS3-1 2
Adenylyltransferase and sulfurtransferase MOCS3-2 2
Adenylyltransferase and sulfurtransferase UBA4 14
Adenylyltransferase and sulfurtransferase uba4 9
DNA damage tolerance protein RHC31 1
Molybdopterin-synthase adenylyltransferase 4
NEDD8-activating enzyme E1 catalytic subunit 10
NEDD8-activating enzyme E1 regulatory subunit 2
Nedd8-activating enzyme E1 catalytic subunit 1
Probable adenylyltransferase/sulfurtransferase MoeZ 2
Probable molybdopterin-synthase adenylyltransferase 3
Protein HesA 2
Protein HesA, heterocyst 1
Protein HesA, vegetative 1
SAMP-activating enzyme E1 1
SUMO-activating enzyme subunit 1 7
SUMO-activating enzyme subunit 2 6
SUMO-activating enzyme subunit 2-A 1
SUMO-activating enzyme subunit 2-B 1
SUMO-activating enzyme subunit uba-2 1
Sulfur carrier protein ThiS adenylyltransferase 2
Sulfur carrier protein adenylyltransferase 1
Ubiquitin-activating enzyme E1 1 4
Ubiquitin-activating enzyme E1 2 1
Ubiquitin-activating enzyme E1 3 1
Ubiquitin-activating enzyme E1-like 2
Ubiquitin-like modifier-activating enzyme 1 6
Ubiquitin-like modifier-activating enzyme 1 Y 1
Ubiquitin-like modifier-activating enzyme 5 5
Ubiquitin-like modifier-activating enzyme 6 1
Ubiquitin-like modifier-activating enzyme 7 2
Uncharacterized protein y4oA 1
tRNA threonylcarbamoyladenosine dehydratase 4
tRNA threonylcarbamoyladenosine dehydratase 1 1
tRNA threonylcarbamoyladenosine dehydratase 2 1

Protein length

Min length 271
Max length 282
Mean length (sd) 273.3 (3.9)
Median length 272.0

Protein length distribution