Orthogroup:group_1058


Homologs in group_1058

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05990 FBDBKF_05990 Morganella morganii S1 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
EHELCC_09035 EHELCC_09035 Morganella morganii S2 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
NLDBIP_09415 NLDBIP_09415 Morganella morganii S4 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
LHKJJB_08340 LHKJJB_08340 Morganella morganii S3 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
HKOGLL_07890 HKOGLL_07890 Morganella morganii S5 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
F4V73_RS15905 F4V73_RS15905 Morganella psychrotolerans ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase
PMI_RS11265 PMI_RS11265 Proteus mirabilis HI4320 ispC 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Distribution of group_1058 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1058 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1058

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1058.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispC 7

Product

# Product Occurence
1 1-deoxy-D-xylulose-5-phosphate reductoisomerase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0743 7 I Lipid transport and metabolism (I) 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00099 7 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Terpenoid backbone biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 C5 isoprenoid biosynthesis, non-mevalonate pathway

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02670 7 1-deoxy-D-xylulose 5-phosphate reductoisomerase
PF08436 7 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
PF13288 7 DXP reductoisomerase C-terminal domain

Annotations of the 447 SwissProt hits

Annotation Number of occurrences
1-deoxy-D-xylulose 5-phosphate reductoisomerase 431
1-deoxy-D-xylulose 5-phosphate reductoisomerase (Fragment) 2
1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 4
1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 4
1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 2
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 3
1-deoxy-D-xylulose-5-phosphate reductoisomerase, chloroplastic 1

Protein length

Min length 397
Max length 398
Mean length (sd) 397.9 (0.4)
Median length 398.0

Protein length distribution