Orthogroup:group_1024


Homologs in group_1024

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05745 FBDBKF_05745 Morganella morganii S1 sodB superoxide dismutase [Fe]
EHELCC_11845 EHELCC_11845 Morganella morganii S2 sodB superoxide dismutase [Fe]
NLDBIP_12185 NLDBIP_12185 Morganella morganii S4 sodB superoxide dismutase [Fe]
LHKJJB_12045 LHKJJB_12045 Morganella morganii S3 sodB superoxide dismutase [Fe]
HKOGLL_10660 HKOGLL_10660 Morganella morganii S5 sodB superoxide dismutase [Fe]
F4V73_RS03585 F4V73_RS03585 Morganella psychrotolerans sodB superoxide dismutase [Fe]
PMI_RS06750 PMI_RS06750 Proteus mirabilis HI4320 sodB superoxide dismutase [Fe]

Distribution of group_1024 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1024 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1024

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1024.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sodB 7

Product

# Product Occurence
1 superoxide dismutase [Fe] 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0605 7 P Inorganic ion transport and metabolism (P) Superoxide dismutase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00081 7 Iron/manganese superoxide dismutases, alpha-hairpin domain
PF02777 7 Iron/manganese superoxide dismutases, C-terminal domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG001867 7 superoxide dismutase VF0169 Stress survival

Annotations of the 240 SwissProt hits

Annotation Number of occurrences
Probable superoxide dismutase [Fe] 1
Probable superoxide dismutase [Mn], mitochondrial 1
Small ribosomal subunit protein mS42 2
Small ribosomal subunit protein mS43 1
Superoxide dismutase [Fe-Zn] 1 1
Superoxide dismutase [Fe] 48
Superoxide dismutase [Fe] (Fragment) 1
Superoxide dismutase [Fe] 1, chloroplastic 2
Superoxide dismutase [Fe] 2, chloroplastic 2
Superoxide dismutase [Fe] 3, chloroplastic 1
Superoxide dismutase [Fe], chloroplastic 1
Superoxide dismutase [Fe], chloroplastic (Fragment) 1
Superoxide dismutase [Mn/Fe] 20
Superoxide dismutase [Mn/Fe] (Fragment) 9
Superoxide dismutase [Mn/Fe] 1 8
Superoxide dismutase [Mn/Fe] 2 9
Superoxide dismutase [Mn] 55
Superoxide dismutase [Mn] (Fragment) 10
Superoxide dismutase [Mn] 1 6
Superoxide dismutase [Mn] 1 (Fragment) 1
Superoxide dismutase [Mn] 1, mitochondrial 2
Superoxide dismutase [Mn] 2 5
Superoxide dismutase [Mn] 2 (Fragment) 1
Superoxide dismutase [Mn] 2, mitochondrial 2
Superoxide dismutase [Mn] 3 (Fragment) 1
Superoxide dismutase [Mn] 3.1, mitochondrial 1
Superoxide dismutase [Mn] 3.2, mitochondrial 1
Superoxide dismutase [Mn] 3.3, mitochondrial 1
Superoxide dismutase [Mn] 3.4, mitochondrial 1
Superoxide dismutase [Mn], mitochondrial 37
Superoxide dismutase [Mn], mitochondrial (Fragment) 8

Protein length

Unique protein length 192

Protein length distribution