Homologs in group_4757

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4757

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4757

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09817 1.62e-35 145 26 15 503 3 virD4 Protein VirD4 Rhizobium radiobacter
P18594 3.58e-35 144 25 17 569 1 virD4 Protein VirD4 Agrobacterium fabrum (strain C58 / ATCC 33970)
P13464 7.18e-34 140 25 21 574 3 virD4 Protein VirD4 Rhizobium rhizogenes
Q00184 5.94e-33 137 23 21 631 3 traG Conjugal transfer protein TraG Escherichia coli
Q00185 9.15e-32 134 23 24 634 1 traG Conjugal transfer protein TraG Escherichia coli
P55421 6.86e-14 78 22 11 425 3 traG Probable conjugal transfer protein TraG Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q6G2A8 1.93e-13 77 20 9 429 3 virD4 Type IV secretion system-coupling protein VirD4 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
Q6FYV9 3.97e-12 72 19 9 429 3 virD4 Type IV secretion system-coupling protein VirD4 Bartonella quintana (strain Toulouse)
Q44360 4.93e-10 66 25 2 147 3 traG Conjugal transfer protein TraG Rhizobium radiobacter
Q44346 7.34e-10 65 25 2 147 3 traG Conjugal transfer protein TraG Agrobacterium fabrum (strain C58 / ATCC 33970)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18595
Feature type CDS
Gene -
Product type IV secretory system conjugative DNA transfer family protein
Location 12581 - 14434 (strand: 1)
Length 1854 (nucleotides) / 617 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_4757
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF02534 Type IV secretory system Conjugative DNA transfer

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3505 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03205 type IV secretion system protein VirD4 [EC:7.4.2.8] Bacterial secretion system -

Protein Sequence

MKLTLPDKKQWLFIVGLMGLISYYAGSVAVYFLNGYNIKFLFNKYDSGVLGTILTQSEFTSKLWLSGVTALGVGFAVSLIAPVLIIVLMNKNENSSLYGDAKFASDDDLKKSKLLKWEKENEKGILVGKYKGKYLWYTAPDFVSLGAGTRAGKGAAIGIPNLLVWLHSLIILDPKQECWKITSKVREILLGHSVYLIDPFNSKTHGINFFDYIELAKESGAKDLLKLVEILFPSYGSTGAEAHFNNLAGQYFTGLTKLLYVFIYLDKKYPEKNYLNQFKVKSPVFSIGSVVDLYGSIDRQFVIDESEELLSLPLDSLMLYHLKDGLTKLKEYHLTEDEQRSSIDGSFRKKMSLFYLPTVRACTDRSDFDLRQLRREKITIYVGINAEDLGIAYDFLNLFFNFVVEVTLRENPDFDPTLKHPCLLMLDEFPSIGYMPIIKKGSGYIAGFNLKLLTIYQNISQLNEIYGIEGAKTLLSAHPCRVIYAVSEQDDANQISDKLGYITTKSKSESQSKGRRDSKSESHSETKRALVLPQELSTLDFKEEFIILKGENPVKAEKALYFSDNYFMDRLLKVSPKLEDEVKKINKKSTVIGVKGLRYPDKEKMLSLGELESEVFL

Flanking regions ( +/- flanking 50bp)

TTTAAAGATATTCATAAAGAGCAGTATTTTAACGAATTAAGGGACTGATAATGAAACTGACCTTACCGGATAAAAAACAATGGCTATTTATCGTCGGACTGATGGGGTTAATCTCTTATTATGCGGGGAGTGTTGCGGTCTATTTTTTAAATGGATATAACATTAAATTCCTTTTTAATAAGTATGACTCAGGTGTATTAGGGACTATTTTAACACAAAGTGAGTTCACATCTAAATTATGGTTATCCGGCGTGACAGCGTTAGGGGTTGGGTTTGCTGTCAGTTTAATTGCACCTGTATTGATTATTGTCCTGATGAATAAAAACGAAAATTCCTCGCTGTATGGGGATGCGAAATTTGCCAGTGATGATGATTTGAAAAAATCAAAATTATTGAAATGGGAAAAGGAAAACGAAAAAGGAATTTTAGTCGGAAAATATAAAGGAAAATACCTCTGGTATACCGCCCCTGATTTTGTTTCACTTGGGGCAGGAACAAGAGCGGGGAAAGGGGCTGCTATTGGTATTCCAAATCTGCTTGTATGGTTGCATTCTTTGATTATTTTAGACCCTAAACAGGAATGTTGGAAAATTACCAGTAAAGTGAGAGAAATATTACTAGGACATAGTGTCTATTTAATTGATCCATTCAACAGTAAAACGCACGGCATTAACTTTTTTGACTACATTGAATTAGCCAAAGAAAGCGGTGCAAAAGATTTACTGAAACTGGTTGAGATTTTATTTCCGTCCTATGGTTCAACGGGGGCAGAGGCGCATTTCAATAATCTGGCAGGTCAATATTTTACTGGTTTGACAAAATTATTGTATGTTTTTATTTATCTGGATAAAAAATATCCCGAAAAAAATTATTTAAATCAGTTTAAGGTTAAAAGTCCTGTTTTTTCTATCGGCTCGGTTGTAGATCTGTATGGCAGTATTGATAGACAATTTGTAATTGATGAAAGCGAAGAATTATTGAGTTTACCATTAGATAGCCTGATGCTTTACCATTTAAAGGATGGGTTAACTAAATTAAAAGAGTATCATTTAACGGAGGATGAACAACGTTCGAGTATCGATGGTTCATTCCGTAAAAAAATGAGCCTGTTTTATCTGCCTACTGTTCGAGCCTGTACTGACCGCAGCGACTTTGATTTACGGCAATTACGCCGTGAAAAAATAACCATTTATGTCGGTATTAATGCAGAAGATCTAGGGATAGCTTATGATTTTCTGAATTTATTTTTTAATTTCGTCGTTGAGGTGACGTTACGGGAAAATCCCGATTTTGATCCGACACTAAAACATCCTTGTTTATTGATGTTAGACGAATTTCCGTCTATCGGATATATGCCTATTATCAAAAAAGGTTCGGGTTATATCGCAGGATTTAACCTTAAATTATTAACTATCTATCAAAACATAAGCCAGTTAAACGAAATTTACGGCATCGAGGGGGCGAAAACATTGTTAAGTGCTCATCCTTGCAGAGTTATTTATGCTGTCAGTGAACAGGATGATGCTAATCAGATATCGGATAAATTAGGTTATATAACAACAAAATCTAAAAGCGAAAGTCAAAGTAAAGGACGCAGAGATTCAAAGAGCGAATCTCATAGTGAAACAAAAAGGGCGTTGGTGTTACCACAGGAATTAAGCACTCTTGATTTCAAGGAGGAATTCATCATTCTGAAAGGGGAAAATCCGGTTAAGGCAGAAAAAGCGCTTTATTTTTCTGATAATTATTTTATGGACAGATTGTTAAAGGTCAGTCCGAAACTTGAAGATGAAGTAAAAAAAATTAATAAAAAATCAACGGTTATTGGGGTGAAAGGATTACGTTATCCCGATAAAGAAAAAATGCTGTCATTAGGTGAATTAGAATCTGAGGTGTTTTTATGAAAAAAGGATTATGGCTTAGTGTTGTTTTATTAACGGCATGTTCATCTCCG