Homologs in group_700

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03015 FBDBKF_03015 69.0 Morganella morganii S1 elaB DUF883 domain-containing protein
EHELCC_07520 EHELCC_07520 69.0 Morganella morganii S2 elaB DUF883 domain-containing protein
NLDBIP_07845 NLDBIP_07845 69.0 Morganella morganii S4 elaB DUF883 domain-containing protein
LHKJJB_07380 LHKJJB_07380 69.0 Morganella morganii S3 elaB DUF883 domain-containing protein
HKOGLL_03550 HKOGLL_03550 69.0 Morganella morganii S5 elaB DUF883 domain-containing protein
F4V73_RS11900 F4V73_RS11900 69.0 Morganella psychrotolerans - YqjD family protein

Distribution of the homologs in the orthogroup group_700

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_700

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64584 1.13e-39 130 64 0 101 3 yqjD Uncharacterized protein YqjD Shigella flexneri
P64581 1.13e-39 130 64 0 101 1 yqjD Uncharacterized protein YqjD Escherichia coli (strain K12)
P64582 1.13e-39 130 64 0 101 3 yqjD Uncharacterized protein YqjD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64583 1.13e-39 130 64 0 101 3 yqjD Uncharacterized protein YqjD Escherichia coli O157:H7
P0ADQ7 4.27e-17 73 41 2 95 1 ygaM Uncharacterized protein YgaM Escherichia coli (strain K12)
P0ADQ8 4.27e-17 73 41 2 95 3 ygaM Uncharacterized protein YgaM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADQ9 4.27e-17 73 41 2 95 3 ygaM Uncharacterized protein YgaM Escherichia coli O157:H7
P0AEH5 3.63e-10 55 36 0 85 1 elaB Protein ElaB Escherichia coli (strain K12)
P0AEH6 3.63e-10 55 36 0 85 3 elaB Protein ElaB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEH7 3.63e-10 55 36 0 85 3 elaB Protein ElaB Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18405
Feature type CDS
Gene -
Product YqjD family protein
Location 4037003 - 4037308 (strand: -1)
Length 306 (nucleotides) / 101 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_700
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05957 DUF883 N-terminal domain
PF19029 DUF883 C-terminal glycine zipper region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4575 Translation, ribosomal structure and biogenesis (J) J Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05594 ElaB protein - -

Protein Sequence

MSHQRSNEDLRSELKSLADTLEEVLNSSADKSKEELQSLREKAEYALRGSRAKLSDAGREIVDNTKEMAGKADNYVRENPWTGVGIGAAVGVVLGVLLSKR

Flanking regions ( +/- flanking 50bp)

TAGTCTATTGTTATAGGTATAACCTCATATCTTGATTAAAGGAGTTACTCATGTCACACCAACGTTCAAATGAAGATCTGCGTAGTGAATTAAAATCTCTGGCTGATACTCTAGAAGAAGTTCTGAACTCCTCGGCAGATAAATCAAAAGAGGAATTACAAAGTTTACGAGAAAAAGCTGAATATGCGCTACGTGGCTCTCGTGCAAAACTCAGTGATGCAGGTAGAGAAATCGTCGATAACACTAAAGAAATGGCGGGTAAAGCGGACAACTATGTGCGTGAAAACCCATGGACAGGTGTTGGTATTGGCGCGGCAGTAGGTGTCGTACTCGGTGTTCTACTTTCGAAACGTTAATCCATAATGAGTGATACTCAAAGACCACAGGGCCCCGCATCCGGGGTTCT