Homologs in group_700

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03015 FBDBKF_03015 87.0 Morganella morganii S1 elaB DUF883 domain-containing protein
EHELCC_07520 EHELCC_07520 87.0 Morganella morganii S2 elaB DUF883 domain-containing protein
NLDBIP_07845 NLDBIP_07845 87.0 Morganella morganii S4 elaB DUF883 domain-containing protein
LHKJJB_07380 LHKJJB_07380 87.0 Morganella morganii S3 elaB DUF883 domain-containing protein
HKOGLL_03550 HKOGLL_03550 87.0 Morganella morganii S5 elaB DUF883 domain-containing protein
PMI_RS18405 PMI_RS18405 69.0 Proteus mirabilis HI4320 - YqjD family protein

Distribution of the homologs in the orthogroup group_700

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_700

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64584 1.41e-37 124 62 0 97 3 yqjD Uncharacterized protein YqjD Shigella flexneri
P64581 1.41e-37 124 62 0 97 1 yqjD Uncharacterized protein YqjD Escherichia coli (strain K12)
P64582 1.41e-37 124 62 0 97 3 yqjD Uncharacterized protein YqjD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64583 1.41e-37 124 62 0 97 3 yqjD Uncharacterized protein YqjD Escherichia coli O157:H7
P0ADQ7 9.05e-19 77 40 1 94 1 ygaM Uncharacterized protein YgaM Escherichia coli (strain K12)
P0ADQ8 9.05e-19 77 40 1 94 3 ygaM Uncharacterized protein YgaM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADQ9 9.05e-19 77 40 1 94 3 ygaM Uncharacterized protein YgaM Escherichia coli O157:H7
P0AEH5 3.97e-08 50 32 0 73 1 elaB Protein ElaB Escherichia coli (strain K12)
P0AEH6 3.97e-08 50 32 0 73 3 elaB Protein ElaB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEH7 3.97e-08 50 32 0 73 3 elaB Protein ElaB Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11900
Feature type CDS
Gene -
Product YqjD family protein
Location 532727 - 533029 (strand: -1)
Length 303 (nucleotides) / 100 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_700
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF05957 DUF883 N-terminal domain
PF19029 DUF883 C-terminal glycine zipper region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4575 Translation, ribosomal structure and biogenesis (J) J Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05594 ElaB protein - -

Protein Sequence

MSHHSNEELRAELKSLADTLESVLGNAENKSKEELDSLKKKAQAALQNSRARLTEGKEQVIQQTKEMAGRADNYVKENPWTGVGIGAAVGVVLGVLLTRR

Flanking regions ( +/- flanking 50bp)

TGAATGACGTTGGGTATATAACCTTGGTTACACAATCACAAGGAGTTCCTATGTCACATCATTCAAATGAAGAGTTACGCGCCGAACTGAAATCATTGGCTGATACTCTGGAATCTGTGTTAGGTAATGCAGAAAATAAATCAAAAGAAGAGCTGGATTCACTGAAGAAAAAAGCACAGGCCGCGTTACAGAATTCCCGTGCCCGCCTGACGGAAGGTAAAGAGCAGGTTATCCAGCAAACCAAAGAGATGGCCGGTCGTGCGGATAACTATGTGAAAGAAAATCCATGGACAGGTGTCGGGATCGGCGCTGCTGTGGGTGTCGTGTTAGGCGTTTTACTGACCCGTCGCTGAGTTATGGCTGAATCTGAACGTCCGCAGGGGCCCGGTAAAGGGCTCCTCGA