Homologs in group_786

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03115 FBDBKF_03115 64.4 Morganella morganii S1 sspB ClpXP protease specificity-enhancing factor
EHELCC_07420 EHELCC_07420 64.4 Morganella morganii S2 sspB ClpXP protease specificity-enhancing factor
NLDBIP_07745 NLDBIP_07745 64.4 Morganella morganii S4 sspB ClpXP protease specificity-enhancing factor
LHKJJB_07280 LHKJJB_07280 64.4 Morganella morganii S3 sspB ClpXP protease specificity-enhancing factor
HKOGLL_03650 HKOGLL_03650 64.4 Morganella morganii S5 sspB ClpXP protease specificity-enhancing factor
F4V73_RS11805 F4V73_RS11805 62.1 Morganella psychrotolerans sspB ClpXP protease specificity-enhancing factor

Distribution of the homologs in the orthogroup group_786

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_786

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFZ3 1.7e-54 172 65 1 123 1 sspB Stringent starvation protein B Escherichia coli (strain K12)
P0AFZ4 1.7e-54 172 65 1 123 3 sspB Stringent starvation protein B Escherichia coli O157:H7
Q83Q08 3.38e-53 169 65 1 123 3 sspB Stringent starvation protein B Shigella flexneri
P45206 1.41e-40 137 56 1 112 1 sspB Stringent starvation protein B homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18270
Feature type CDS
Gene sspB
Product ClpXP protease specificity-enhancing factor
Location 4007196 - 4007705 (strand: 1)
Length 510 (nucleotides) / 169 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_786
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04386 Stringent starvation protein B

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2969 Posttranslational modification, protein turnover, chaperones (O) O Stringent starvation protein B, binds SsrA peptide

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03600 stringent starvation protein B - -

Protein Sequence

MEIKDMSPRRPHLLRAHYDWILENELTPHLVVDVNVVGVQVPMEYAHDGQIVLNISPFAVSHLELMPHQVLFSASFGGVPRKVRVPMAAVIAIYARENGAGMMFEPEPAYEEGYTPSLMDDEQQDGSSASATEGLSLVKDETQAENPSSPDDDPEPPRPTGRPSLRVVK

Flanking regions ( +/- flanking 50bp)

TAACCGAAGCAGAGCGCGAAATGCGTTTACCTTCAAGAGGATAATAGAGCATGGAGATTAAGGATATGTCTCCGCGCCGTCCGCATTTATTGCGTGCGCATTATGATTGGATCCTTGAAAACGAGTTAACCCCCCACTTAGTGGTAGATGTTAATGTCGTGGGTGTTCAAGTCCCTATGGAATATGCGCACGATGGTCAAATCGTACTAAATATTTCTCCTTTTGCGGTAAGTCATCTTGAATTGATGCCGCATCAGGTACTATTTAGTGCAAGCTTTGGTGGTGTACCTCGTAAAGTGCGCGTACCTATGGCGGCTGTAATAGCAATATATGCGCGAGAAAATGGTGCGGGTATGATGTTTGAGCCAGAGCCAGCCTATGAGGAAGGTTATACACCATCATTGATGGATGATGAGCAGCAAGACGGCAGTTCAGCTTCGGCCACTGAAGGACTGTCTTTAGTGAAAGATGAGACACAGGCTGAAAACCCATCTTCTCCAGATGATGATCCTGAGCCTCCTCGTCCAACAGGTCGCCCATCATTGCGTGTAGTGAAATAAATAACGTTTTTATTTTCATTGCATAAAGCCCAGTTAAATACTGGGCTTTT